Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PH545_RS10455 Genome accession   NZ_CP116414
Coordinates   2217065..2217364 (-) Length   99 a.a.
NCBI ID   WP_053049442.1    Uniprot ID   -
Organism   Vibrio harveyi strain K2014767     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2212065..2222364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH545_RS10430 (PH545_10430) - 2212483..2213697 (+) 1215 WP_289879775.1 pyridoxal phosphate-dependent aminotransferase -
  PH545_RS10435 (PH545_10435) yfbR 2213781..2214365 (+) 585 WP_289879777.1 5'-deoxynucleotidase -
  PH545_RS10440 (PH545_10440) - 2214369..2215703 (+) 1335 WP_045490409.1 anti-phage deoxyguanosine triphosphatase -
  PH545_RS10445 (PH545_10445) - 2215740..2216300 (-) 561 WP_289881528.1 tRNA-uridine aminocarboxypropyltransferase -
  PH545_RS10450 (PH545_10450) rrtA 2216361..2216912 (+) 552 WP_017818999.1 rhombosortase -
  PH545_RS10455 (PH545_10455) comEA 2217065..2217364 (-) 300 WP_053049442.1 helix-hairpin-helix domain-containing protein Machinery gene
  PH545_RS10460 (PH545_10460) ppiD 2217510..2219369 (-) 1860 WP_289879778.1 peptidylprolyl isomerase -
  PH545_RS10465 (PH545_10465) - 2219585..2219857 (-) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10966.83 Da        Isoelectric Point: 8.9385

>NTDB_id=777285 PH545_RS10455 WP_053049442.1 2217065..2217364(-) (comEA) [Vibrio harveyi strain K2014767]
MKWMLTLCLLLLAPMSWAEESKSANTKTAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=777285 PH545_RS10455 WP_053049442.1 2217065..2217364(-) (comEA) [Vibrio harveyi strain K2014767]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AACAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACTATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

81.818

100

0.818
  comEA Vibrio parahaemolyticus RIMD 2210633

74.747

100

0.747
  comEA Vibrio cholerae C6706

55.556

100

0.556
  comEA Vibrio cholerae strain A1552

55.556

100

0.556
  comE1/comEA Haemophilus influenzae Rd KW20

40.179

100

0.455
  comEA/comE1 Glaesserella parasuis strain SC1401

38.318

100

0.414