Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MWM12_RS09555 Genome accession   NZ_AP025603
Coordinates   1728291..1729475 (-) Length   394 a.a.
NCBI ID   WP_244340911.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM1-7     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1723291..1734475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM12_RS09530 (TthSNM17_18700) fabZ 1723516..1723944 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MWM12_RS09535 (TthSNM17_18710) - 1723951..1724988 (-) 1038 WP_244340909.1 rod shape-determining protein -
  MWM12_RS09540 (TthSNM17_18720) rny 1725000..1726724 (-) 1725 WP_244340910.1 ribonuclease Y -
  MWM12_RS09545 (TthSNM17_18730) recA 1726725..1727747 (-) 1023 WP_011228937.1 recombinase RecA Machinery gene
  MWM12_RS09550 (TthSNM17_18740) thpR 1727698..1728294 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  MWM12_RS09555 (TthSNM17_18750) cinA 1728291..1729475 (-) 1185 WP_244340911.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  MWM12_RS09560 (TthSNM17_18760) - 1729448..1730224 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  MWM12_RS09565 (TthSNM17_18770) - 1730264..1731313 (+) 1050 WP_244340913.1 MFS transporter -
  MWM12_RS09570 (TthSNM17_18780) - 1731306..1731932 (+) 627 WP_244340914.1 HAD family phosphatase -
  MWM12_RS09575 (TthSNM17_18790) - 1731918..1733003 (-) 1086 WP_244340915.1 enolase C-terminal domain-like protein -
  MWM12_RS09580 (TthSNM17_18800) - 1733021..1733728 (-) 708 WP_244340916.1 AAA family ATPase -
  MWM12_RS09585 - 1734040..1734249 (-) 210 WP_244452312.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 43015.48 Da        Isoelectric Point: 7.0545

>NTDB_id=77668 MWM12_RS09555 WP_244340911.1 1728291..1729475(-) (cinA) [Thermus thermophilus strain SNM1-7]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVREEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKRLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=77668 MWM12_RS09555 WP_244340911.1 1728291..1729475(-) (cinA) [Thermus thermophilus strain SNM1-7]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGAAGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAGGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAGAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCCTAAGAAGCGTCTACGCGGCTTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363

Multiple sequence alignment