Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MWM06_RS11125 Genome accession   NZ_AP025596
Coordinates   1994097..1995281 (-) Length   394 a.a.
NCBI ID   WP_203971262.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM1-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989097..2000281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM06_RS11100 (TthSNM11_22260) fabZ 1989322..1989750 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MWM06_RS11105 (TthSNM11_22270) - 1989757..1990794 (-) 1038 WP_244340909.1 rod shape-determining protein -
  MWM06_RS11110 (TthSNM11_22280) rny 1990806..1992530 (-) 1725 WP_244340910.1 ribonuclease Y -
  MWM06_RS11115 (TthSNM11_22290) recA 1992531..1993553 (-) 1023 WP_244344494.1 recombinase RecA Machinery gene
  MWM06_RS11120 (TthSNM11_22300) thpR 1993504..1994100 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  MWM06_RS11125 (TthSNM11_22310) cinA 1994097..1995281 (-) 1185 WP_203971262.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  MWM06_RS11130 (TthSNM11_22320) - 1995254..1996030 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  MWM06_RS11135 (TthSNM11_22330) - 1996070..1997119 (+) 1050 WP_244360734.1 MFS transporter -
  MWM06_RS11140 (TthSNM11_22340) - 1997112..1997738 (+) 627 WP_244360736.1 HAD family phosphatase -
  MWM06_RS11145 (TthSNM11_22350) - 1997724..1998809 (-) 1086 WP_244360737.1 enolase C-terminal domain-like protein -
  MWM06_RS11150 (TthSNM11_22360) - 1998827..1999540 (-) 714 WP_011228941.1 hypothetical protein -
  MWM06_RS11155 (TthSNM11_22370) - 1999573..2000070 (+) 498 WP_244344505.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42987.47 Da        Isoelectric Point: 7.0543

>NTDB_id=77614 MWM06_RS11125 WP_203971262.1 1994097..1995281(-) (cinA) [Thermus thermophilus strain SNM1-1]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVREEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=77614 MWM06_RS11125 WP_203971262.1 1994097..1995281(-) (cinA) [Thermus thermophilus strain SNM1-1]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGTACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCTATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGAAGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCCTAAGAAGCGTCTACGCGGCTTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363

Multiple sequence alignment