Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R74_RS19885 Genome accession   NZ_AP022281
Coordinates   4328560..4330074 (+) Length   504 a.a.
NCBI ID   WP_064338983.1    Uniprot ID   A0AAC9B967
Organism   Aeromonas veronii strain WP8-W19-CRE-03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4323560..4335074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R74_RS19870 (WP8W19C03_38470) - 4325297..4326241 (-) 945 WP_005357461.1 branched-chain amino acid transaminase -
  H7R74_RS19875 (WP8W19C03_38480) ilvM 4326254..4326532 (-) 279 WP_182963050.1 acetolactate synthase 2 small subunit -
  H7R74_RS19880 (WP8W19C03_38490) ilvG 4326529..4328175 (-) 1647 WP_182963051.1 acetolactate synthase 2 catalytic subunit -
  H7R74_RS19885 (WP8W19C03_38500) comM 4328560..4330074 (+) 1515 WP_064338983.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R74_RS19890 (WP8W19C03_38510) - 4330201..4331100 (+) 900 WP_043823224.1 acyltransferase -
  H7R74_RS19895 (WP8W19C03_38520) - 4331107..4332072 (+) 966 WP_064338984.1 acyltransferase -
  H7R74_RS19900 (WP8W19C03_38530) - 4331997..4332503 (-) 507 WP_064338985.1 DUF523 domain-containing protein -
  H7R74_RS19905 (WP8W19C03_38540) - 4332500..4333150 (-) 651 WP_064338986.1 NrtR DNA-binding winged helix domain-containing protein -
  H7R74_RS19910 (WP8W19C03_38550) - 4333225..4333860 (+) 636 WP_005357452.1 nicotinamidase -
  H7R74_RS19915 (WP8W19C03_38560) pncB 4333862..4335040 (+) 1179 WP_182963052.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54534.48 Da        Isoelectric Point: 7.9889

>NTDB_id=77523 H7R74_RS19885 WP_064338983.1 4328560..4330074(+) (comM) [Aeromonas veronii strain WP8-W19-CRE-03]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAALACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRARVLAARERMLSRNGKLNNLLDSREIEDICRLSPKDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=77523 H7R74_RS19885 WP_064338983.1 4328560..4330074(+) (comM) [Aeromonas veronii strain WP8-W19-CRE-03]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGC
TTCGATCTGGCTATCGCTATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACAGGCGAAATTCGTCCCGTACTCGGGGTACTGCCTGCCGCACTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCAGTCACCGCCTGGCTGGCAGGACAATACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCAGATCTGCAGGATGTTATTGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCTGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTACGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACAGTTGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGCTCGGGTGCTGGCGGCGCGAGAGCGCATGCTGAGTCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGAAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment