Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PG903_RS02635 Genome accession   NZ_CP115952
Coordinates   558311..558817 (+) Length   168 a.a.
NCBI ID   WP_013206904.1    Uniprot ID   -
Organism   Ralstonia solanacearum CFBP2957     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553311..563817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG903_RS02610 - 553661..554287 (+) 627 WP_013206907.1 DUF2889 domain-containing protein -
  PG903_RS02615 sucC 554356..555522 (+) 1167 WP_003261636.1 ADP-forming succinate--CoA ligase subunit beta -
  PG903_RS02620 sucD 555601..556482 (+) 882 WP_003269430.1 succinate--CoA ligase subunit alpha -
  PG903_RS02625 - 556640..557338 (+) 699 WP_013206906.1 TerC family protein -
  PG903_RS02630 pilA 557522..558043 (+) 522 WP_043908616.1 pilin Machinery gene
  PG903_RS02635 pilA 558311..558817 (+) 507 WP_013206904.1 pilin Machinery gene
  PG903_RS02640 - 558892..560625 (+) 1734 WP_013206903.1 PglL family O-oligosaccharyltransferase -
  PG903_RS02645 moaC 560702..561178 (-) 477 WP_013206902.1 cyclic pyranopterin monophosphate synthase MoaC -
  PG903_RS02650 - 561280..562992 (+) 1713 WP_043908614.1 tetratricopeptide repeat protein -
  PG903_RS02655 - 563011..563598 (-) 588 WP_043908613.1 DUF2946 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17109.87 Da        Isoelectric Point: 9.9491

>NTDB_id=774577 PG903_RS02635 WP_013206904.1 558311..558817(+) (pilA) [Ralstonia solanacearum CFBP2957]
MKSMRHLNKRVQKGFTLIELMIVVAIVGILAAIAIPAYQDYTVRARVTEGLSLAAQAKALVSENAANAQTDLSVGSSVFT
ATKNVADLKILGTGSVPGQITVTYTTAAGGGTLALVPTAAGTQLPLASAPSGPIMWTCYAQNKAAAASSVAPSGTMTLAA
KYAPAECR

Nucleotide


Download         Length: 507 bp        

>NTDB_id=774577 PG903_RS02635 WP_013206904.1 558311..558817(+) (pilA) [Ralstonia solanacearum CFBP2957]
ATGAAGTCGATGCGTCATCTTAACAAGCGTGTCCAAAAGGGTTTCACGCTGATCGAACTGATGATCGTGGTCGCGATCGT
CGGTATTCTGGCTGCTATCGCCATTCCGGCCTATCAGGACTACACGGTTCGTGCACGCGTGACGGAAGGTCTGTCGCTGG
CTGCGCAAGCCAAGGCACTGGTGTCGGAAAACGCTGCCAATGCGCAGACTGACCTGTCGGTAGGTTCGTCGGTGTTCACG
GCCACCAAGAACGTTGCCGACCTCAAGATTCTGGGTACGGGTAGCGTTCCGGGACAGATTACCGTCACCTACACGACGGC
AGCTGGCGGCGGCACGCTGGCTCTGGTTCCGACTGCGGCTGGTACTCAGCTGCCGCTTGCCTCGGCACCGTCGGGCCCGA
TCATGTGGACCTGCTACGCTCAAAATAAGGCCGCTGCTGCCAGCAGCGTTGCGCCGAGCGGTACGATGACGCTGGCGGCC
AAGTATGCCCCGGCAGAATGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)

Pilin (bacterial filament) (Pilin)

(43-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

93.452

100

0.935
  pilA2 Legionella pneumophila str. Paris

50.932

95.833

0.488
  pilA2 Legionella pneumophila strain ERS1305867

50.311

95.833

0.482
  comP Acinetobacter baylyi ADP1

46.199

100

0.47
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.629

100

0.435