Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OW730_RS02200 Genome accession   NZ_CP115913
Coordinates   451370..451834 (+) Length   154 a.a.
NCBI ID   WP_271227470.1    Uniprot ID   -
Organism   Oceanirhabdus sp. W0125-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 446370..456834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OW730_RS02165 (OW730_02165) - 446832..447674 (+) 843 WP_271229502.1 ParB/RepB/Spo0J family partition protein -
  OW730_RS02170 (OW730_02170) yyaC 447852..448427 (-) 576 WP_271227465.1 spore protease YyaC -
  OW730_RS02175 (OW730_02175) - 448479..449633 (-) 1155 WP_271227466.1 aminotransferase class V-fold PLP-dependent enzyme -
  OW730_RS02180 (OW730_02180) yedF 449842..450429 (+) 588 WP_271227467.1 sulfurtransferase-like selenium metabolism protein YedF -
  OW730_RS02185 (OW730_02185) - 450464..450724 (+) 261 WP_271227468.1 DUF3343 domain-containing protein -
  OW730_RS02190 (OW730_02190) - 450751..450948 (+) 198 WP_333781279.1 DUF951 domain-containing protein -
  OW730_RS02195 (OW730_02195) rpsF 451069..451356 (+) 288 WP_271227469.1 30S ribosomal protein S6 -
  OW730_RS02200 (OW730_02200) ssbA 451370..451834 (+) 465 WP_271227470.1 single-stranded DNA-binding protein Machinery gene
  OW730_RS02205 (OW730_02205) rpsR 451860..452087 (+) 228 WP_271227471.1 30S ribosomal protein S18 -
  OW730_RS02210 (OW730_02210) - 452227..452541 (+) 315 WP_271227472.1 MazG-like family protein -
  OW730_RS02215 (OW730_02215) - 452586..454577 (+) 1992 WP_271227473.1 DHH family phosphoesterase -
  OW730_RS02220 (OW730_02220) rplI 454577..455020 (+) 444 WP_271227474.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16803.60 Da        Isoelectric Point: 4.7915

>NTDB_id=774331 OW730_RS02200 WP_271227470.1 451370..451834(+) (ssbA) [Oceanirhabdus sp. W0125-5]
MNKVVLIGRLTKDPELKFTPGNGTAVATFSIAVDRRFKSEGQPTADFIPIVVWGKQAENTANYMSKGRLIGISGRIQTRS
YEAKDGTRRYVTEIVAEEVQFLGGKQSFEGNNEFGGNNDFGGGFGGGNNNQPSFKKEPDYGNDVTPVDDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=774331 OW730_RS02200 WP_271227470.1 451370..451834(+) (ssbA) [Oceanirhabdus sp. W0125-5]
GTGAACAAGGTTGTTTTAATTGGTAGATTAACAAAAGATCCTGAATTAAAATTTACCCCTGGAAACGGAACTGCTGTAGC
AACATTTAGTATTGCTGTAGATAGAAGGTTCAAAAGTGAGGGGCAACCTACTGCTGATTTTATCCCAATAGTTGTTTGGG
GTAAACAAGCAGAAAATACTGCTAACTATATGAGTAAAGGTAGACTTATTGGCATTAGTGGTAGAATTCAAACTAGAAGC
TATGAAGCTAAGGATGGAACTAGAAGATATGTTACTGAAATAGTAGCTGAAGAAGTTCAATTCTTAGGAGGAAAGCAATC
ATTTGAAGGTAACAATGAATTTGGAGGTAACAATGACTTTGGAGGAGGATTTGGTGGAGGTAATAACAATCAACCATCCT
TTAAAAAAGAACCTGATTATGGGAACGATGTTACTCCAGTTGATGATGATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.133

100

0.552
  ssb Latilactobacillus sakei subsp. sakei 23K

38.596

100

0.429
  ssb Neisseria meningitidis MC58

34.637

100

0.403
  ssb Neisseria gonorrhoeae MS11

34.637

100

0.403
  ssb Glaesserella parasuis strain SC1401

31.868

100

0.377
  ssb Vibrio cholerae strain A1552

32.948

100

0.37