Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7R77_RS00570 Genome accession   NZ_AP022254
Coordinates   116862..118379 (-) Length   505 a.a.
NCBI ID   WP_042016430.1    Uniprot ID   -
Organism   Aeromonas caviae strain WP8-S18-ESBL-04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 111862..123379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R77_RS00545 (WP8S18E04_01010) - 112998..113633 (-) 636 WP_043153394.1 nicotinamidase -
  H7R77_RS00550 (WP8S18E04_01020) - 113708..114358 (+) 651 WP_182976224.1 DNA mismatch repair protein MutT -
  H7R77_RS00555 (WP8S18E04_01030) - 114435..114920 (+) 486 WP_134997234.1 DUF523 domain-containing protein -
  H7R77_RS00560 (WP8S18E04_01040) - 114866..115822 (-) 957 WP_134997233.1 acyltransferase -
  H7R77_RS00565 (WP8S18E04_01050) - 115830..116729 (-) 900 WP_039039683.1 acyltransferase -
  H7R77_RS00570 (WP8S18E04_01060) comM 116862..118379 (-) 1518 WP_042016430.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7R77_RS00575 (WP8S18E04_01070) ilvG 118764..120410 (+) 1647 WP_134997232.1 acetolactate synthase 2 catalytic subunit -
  H7R77_RS00580 (WP8S18E04_01080) ilvM 120407..120664 (+) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  H7R77_RS00585 (WP8S18E04_01090) - 120677..121621 (+) 945 WP_039039680.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54686.63 Da        Isoelectric Point: 7.4701

>NTDB_id=77406 H7R77_RS00570 WP_042016430.1 116862..118379(-) (comM) [Aeromonas caviae strain WP8-S18-ESBL-04]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAEILPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=77406 H7R77_RS00570 WP_042016430.1 116862..118379(-) (comM) [Aeromonas caviae strain WP8-S18-ESBL-04]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACTTGGCCCCTGCGGATCTGCCCAAAGAAGGGGGCCGC
TTCGACCTGGCCATCGCCATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCGGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGATCCTACCCGACGT
GCCGGATCTGCAGGATGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACTCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGAGTCCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTTCGCGAGCCGCTGGAAACC
GGGCACATTACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGACCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAATCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAAGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGACAGGCTGTTGTCGCGCCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.944

99.406

0.636
  comM Haemophilus influenzae Rd KW20

61.569

100

0.622
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.433

100

0.608
  comM Legionella pneumophila str. Paris

51.411

98.218

0.505
  comM Legionella pneumophila strain ERS1305867

51.411

98.218

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.776

100

0.461

Multiple sequence alignment