Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PDI73_RS07075 Genome accession   NZ_CP115479
Coordinates   1496094..1496741 (-) Length   215 a.a.
NCBI ID   WP_277730114.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491094..1501741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS07050 (PDI73_07050) atpF 1491163..1491669 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  PDI73_RS07055 (PDI73_07055) atpB 1491684..1492397 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  PDI73_RS07060 (PDI73_07060) - 1492442..1492657 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  PDI73_RS07065 (PDI73_07065) - 1492842..1493618 (-) 777 WP_058206315.1 alpha/beta hydrolase family protein -
  PDI73_RS07070 (PDI73_07070) comEC 1493903..1496113 (-) 2211 WP_187398453.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PDI73_RS07075 (PDI73_07075) comEA 1496094..1496741 (-) 648 WP_277730114.1 ComEA family DNA-binding protein Machinery gene
  PDI73_RS07080 (PDI73_07080) - 1496801..1498162 (-) 1362 WP_029344292.1 ABC transporter permease -
  PDI73_RS07085 (PDI73_07085) - 1498159..1499091 (-) 933 WP_058203963.1 ABC transporter ATP-binding protein -
  PDI73_RS07090 (PDI73_07090) - 1499196..1499594 (-) 399 WP_023188528.1 hypothetical protein -
  PDI73_RS07095 (PDI73_07095) - 1499698..1500261 (-) 564 WP_004255233.1 GNAT family N-acetyltransferase -
  PDI73_RS07100 (PDI73_07100) - 1500434..1501612 (-) 1179 WP_012898345.1 SLC13 family permease -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23610.74 Da        Isoelectric Point: 4.8659

>NTDB_id=772483 PDI73_RS07075 WP_277730114.1 1496094..1496741(-) (comEA) [Lactococcus lactis strain EP2]
MDKILEKVKEYWKMIVLVVCGLIAGGVFYVLTNGQKPTTNLSVENLSSVSRQSSVSKFSEPNEKSVSKIMVDLKGAVTKP
NVYQISSDERLVDLIKEAGGFTDQADQKSINLSAKLKDEEVIYVPKIGENSSTENTDSSANSVTSQVSTTTEKININQAD
LTELQKLTGVGQKKAQDIIDFRTKNGDFKSLEDLGKVSGFGDKTLEKLKDELCFE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=772483 PDI73_RS07075 WP_277730114.1 1496094..1496741(-) (comEA) [Lactococcus lactis strain EP2]
ATGGATAAGATTTTAGAAAAAGTAAAAGAATATTGGAAAATGATTGTTTTAGTTGTTTGTGGGCTCATTGCTGGTGGGGT
TTTTTACGTTTTAACCAACGGTCAAAAGCCAACTACAAATCTGTCAGTAGAAAATTTAAGTTCTGTCAGCAGGCAAAGCT
CTGTCAGTAAATTTAGTGAACCTAATGAAAAATCTGTCAGTAAAATTATGGTTGATTTAAAAGGTGCGGTAACAAAGCCT
AATGTCTATCAAATTTCGTCAGATGAACGTCTAGTTGATCTAATTAAGGAAGCTGGTGGTTTTACTGACCAAGCTGACCA
GAAATCAATTAATCTGTCAGCAAAATTAAAAGATGAAGAAGTAATTTATGTCCCAAAAATTGGTGAAAATTCAAGCACAG
AAAATACTGATAGCTCTGCTAATTCGGTCACTAGTCAAGTCTCAACAACCACTGAAAAAATAAATATCAATCAAGCAGAT
TTGACTGAACTACAAAAATTAACAGGTGTTGGTCAGAAAAAAGCTCAAGACATCATCGATTTTCGGACGAAAAATGGTGA
TTTCAAATCACTTGAAGACTTGGGAAAAGTTTCTGGTTTTGGAGATAAAACACTAGAAAAATTGAAAGATGAGTTGTGTT
TTGAATAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(70-125)

Helix-hairpin-helix motif (HHH_3)

(151-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

75.688

100

0.767
  comEA/celA/cilE Streptococcus mitis SK321

44.907

100

0.451
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

43.578

100

0.442
  comEA/celA/cilE Streptococcus pneumoniae Rx1

41.553

100

0.423
  comEA/celA/cilE Streptococcus pneumoniae D39

41.553

100

0.423
  comEA/celA/cilE Streptococcus pneumoniae R6

41.553

100

0.423
  comEA/celA/cilE Streptococcus mitis NCTC 12261

41.743

100

0.423
  comEA Latilactobacillus sakei subsp. sakei 23K

36.564

100

0.386