Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PDI58_RS05145 | Genome accession | NZ_CP115474 |
| Coordinates | 1001010..1001480 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934768.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain AF4005 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 968851..1017084 | 1001010..1001480 | within | 0 |
Gene organization within MGE regions
Location: 968851..1017084
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PDI58_RS04900 (PDI58_04900) | - | 968851..969036 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| PDI58_RS04905 (PDI58_04905) | - | 969038..969148 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| PDI58_RS04910 (PDI58_04910) | - | 969219..969371 (-) | 153 | WP_001788502.1 | hypothetical protein | - |
| PDI58_RS04915 (PDI58_04915) | - | 969613..971058 (-) | 1446 | WP_001148142.1 | SH3 domain-containing protein | - |
| PDI58_RS04920 (PDI58_04920) | - | 971039..971476 (-) | 438 | WP_000354135.1 | phage holin | - |
| PDI58_RS04925 (PDI58_04925) | - | 971533..971928 (-) | 396 | WP_000398882.1 | hypothetical protein | - |
| PDI58_RS04930 (PDI58_04930) | - | 971934..973106 (-) | 1173 | WP_000276624.1 | BppU family phage baseplate upper protein | - |
| PDI58_RS04935 (PDI58_04935) | - | 973119..975017 (-) | 1899 | WP_290267498.1 | glucosaminidase domain-containing protein | - |
| PDI58_RS04940 (PDI58_04940) | - | 975154..975453 (-) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| PDI58_RS04945 (PDI58_04945) | - | 975493..975666 (-) | 174 | WP_000782200.1 | XkdX family protein | - |
| PDI58_RS04950 (PDI58_04950) | - | 975670..976047 (-) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| PDI58_RS04955 (PDI58_04955) | - | 976047..977870 (-) | 1824 | WP_290267500.1 | BppU family phage baseplate upper protein | - |
| PDI58_RS04960 (PDI58_04960) | - | 977870..979780 (-) | 1911 | WP_000066423.1 | hypothetical protein | - |
| PDI58_RS04965 (PDI58_04965) | - | 979795..981696 (-) | 1902 | WP_001599106.1 | SGNH/GDSL hydrolase family protein | - |
| PDI58_RS04970 (PDI58_04970) | - | 981705..982652 (-) | 948 | WP_290267504.1 | phage tail family protein | - |
| PDI58_RS04975 (PDI58_04975) | - | 982665..986129 (-) | 3465 | WP_000141485.1 | hypothetical protein | - |
| PDI58_RS04980 (PDI58_04980) | - | 986146..986490 (-) | 345 | WP_000105584.1 | hypothetical protein | - |
| PDI58_RS04985 (PDI58_04985) | - | 986520..986885 (-) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| PDI58_RS04990 (PDI58_04990) | - | 986947..987528 (-) | 582 | WP_000002583.1 | phage major tail protein, TP901-1 family | - |
| PDI58_RS04995 (PDI58_04995) | - | 987547..987930 (-) | 384 | WP_000188643.1 | hypothetical protein | - |
| PDI58_RS05000 (PDI58_05000) | - | 987942..988289 (-) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| PDI58_RS05005 (PDI58_05005) | - | 988289..988591 (-) | 303 | WP_001268312.1 | hypothetical protein | - |
| PDI58_RS05010 (PDI58_05010) | - | 988588..988920 (-) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| PDI58_RS05015 (PDI58_05015) | - | 988929..989216 (-) | 288 | WP_001114086.1 | hypothetical protein | - |
| PDI58_RS05020 (PDI58_05020) | - | 989238..990212 (-) | 975 | WP_000438511.1 | phage major capsid protein | - |
| PDI58_RS05025 (PDI58_05025) | - | 990226..990846 (-) | 621 | WP_000392144.1 | DUF4355 domain-containing protein | - |
| PDI58_RS05030 (PDI58_05030) | - | 990834..990927 (-) | 94 | Protein_965 | hypothetical protein | - |
| PDI58_RS05035 (PDI58_05035) | - | 990955..991125 (-) | 171 | WP_000072202.1 | hypothetical protein | - |
| PDI58_RS05040 (PDI58_05040) | - | 991198..992193 (-) | 996 | WP_001668926.1 | minor capsid protein | - |
| PDI58_RS05045 (PDI58_05045) | - | 992200..993738 (-) | 1539 | WP_031766723.1 | phage portal protein | - |
| PDI58_RS05050 (PDI58_05050) | - | 993749..995026 (-) | 1278 | WP_000169945.1 | PBSX family phage terminase large subunit | - |
| PDI58_RS05055 (PDI58_05055) | - | 995013..995453 (-) | 441 | WP_001003272.1 | terminase small subunit | - |
| PDI58_RS05060 (PDI58_05060) | - | 995640..996062 (-) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| PDI58_RS05065 (PDI58_05065) | - | 996086..996232 (-) | 147 | WP_000990001.1 | hypothetical protein | - |
| PDI58_RS05070 (PDI58_05070) | - | 996233..996406 (-) | 174 | WP_000595244.1 | transcriptional activator RinB | - |
| PDI58_RS05075 (PDI58_05075) | - | 996406..996792 (-) | 387 | WP_001555739.1 | hypothetical protein | - |
| PDI58_RS05080 (PDI58_05080) | - | 996782..997018 (-) | 237 | WP_000608273.1 | hypothetical protein | - |
| PDI58_RS05085 (PDI58_05085) | - | 997011..997214 (-) | 204 | WP_001072795.1 | hypothetical protein | - |
| PDI58_RS05090 (PDI58_05090) | - | 997211..997405 (-) | 195 | WP_000132920.1 | hypothetical protein | - |
| PDI58_RS05095 (PDI58_05095) | - | 997402..997608 (-) | 207 | WP_000195779.1 | DUF1381 domain-containing protein | - |
| PDI58_RS05100 (PDI58_05100) | - | 997625..997798 (-) | 174 | WP_001209219.1 | hypothetical protein | - |
| PDI58_RS05105 (PDI58_05105) | - | 997835..998371 (-) | 537 | WP_000185704.1 | dUTPase | - |
| PDI58_RS05110 (PDI58_05110) | - | 998364..998546 (-) | 183 | WP_000028425.1 | hypothetical protein | - |
| PDI58_RS05115 (PDI58_05115) | - | 998536..998787 (-) | 252 | WP_001065074.1 | DUF1024 family protein | - |
| PDI58_RS05120 (PDI58_05120) | - | 998828..999070 (-) | 243 | WP_000131382.1 | SAV1978 family virulence-associated passenger protein | - |
| PDI58_RS05125 (PDI58_05125) | - | 999074..999442 (-) | 369 | WP_001140280.1 | SA1788 family PVL leukocidin-associated protein | - |
| PDI58_RS05130 (PDI58_05130) | - | 999455..999859 (-) | 405 | WP_000401971.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PDI58_RS05135 (PDI58_05135) | - | 999868..1000086 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| PDI58_RS05140 (PDI58_05140) | - | 1000093..1000980 (-) | 888 | WP_000148306.1 | DnaD domain protein | - |
| PDI58_RS05145 (PDI58_05145) | ssbA | 1001010..1001480 (-) | 471 | WP_000934768.1 | single-stranded DNA-binding protein | Machinery gene |
| PDI58_RS05150 (PDI58_05150) | - | 1001481..1002098 (-) | 618 | WP_071890040.1 | MBL fold metallo-hydrolase | - |
| PDI58_RS05155 (PDI58_05155) | - | 1002179..1003099 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| PDI58_RS05160 (PDI58_05160) | - | 1003101..1005044 (-) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| PDI58_RS05165 (PDI58_05165) | - | 1005053..1005316 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| PDI58_RS05170 (PDI58_05170) | - | 1005325..1005585 (-) | 261 | WP_000291075.1 | DUF1108 family protein | - |
| PDI58_RS05175 (PDI58_05175) | - | 1005679..1005999 (-) | 321 | WP_000219666.1 | hypothetical protein | - |
| PDI58_RS05180 (PDI58_05180) | - | 1006000..1006167 (-) | 168 | WP_001285957.1 | DUF1270 domain-containing protein | - |
| PDI58_RS05185 (PDI58_05185) | - | 1006160..1006288 (-) | 129 | WP_001559112.1 | hypothetical protein | - |
| PDI58_RS05190 (PDI58_05190) | - | 1006347..1006577 (+) | 231 | WP_000395457.1 | hypothetical protein | - |
| PDI58_RS05195 (PDI58_05195) | - | 1006552..1006728 (-) | 177 | WP_001094937.1 | hypothetical protein | - |
| PDI58_RS05200 (PDI58_05200) | - | 1006753..1007493 (-) | 741 | WP_086114972.1 | phage antirepressor KilAC domain-containing protein | - |
| PDI58_RS05205 (PDI58_05205) | - | 1007495..1007680 (-) | 186 | WP_000933365.1 | helix-turn-helix transcriptional regulator | - |
| PDI58_RS05210 (PDI58_05210) | - | 1008131..1008367 (+) | 237 | WP_216798501.1 | hypothetical protein | - |
| PDI58_RS05215 (PDI58_05215) | - | 1008360..1008521 (-) | 162 | WP_001153175.1 | hypothetical protein | - |
| PDI58_RS05220 (PDI58_05220) | - | 1008536..1008790 (-) | 255 | WP_001106626.1 | helix-turn-helix transcriptional regulator | - |
| PDI58_RS05225 (PDI58_05225) | - | 1008980..1009618 (+) | 639 | WP_000874708.1 | S24 family peptidase | - |
| PDI58_RS05230 (PDI58_05230) | - | 1009650..1010330 (+) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| PDI58_RS05235 (PDI58_05235) | - | 1010537..1011922 (+) | 1386 | WP_000861313.1 | recombinase family protein | - |
| PDI58_RS05240 (PDI58_05240) | rpmF | 1012039..1012212 (-) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| PDI58_RS05245 (PDI58_05245) | - | 1012292..1012849 (-) | 558 | WP_000872158.1 | DUF177 domain-containing protein | - |
| PDI58_RS05250 (PDI58_05250) | - | 1012976..1014115 (+) | 1140 | WP_000843611.1 | nucleotidyltransferase | - |
| PDI58_RS05255 (PDI58_05255) | coaD | 1014177..1014659 (-) | 483 | WP_000401377.1 | pantetheine-phosphate adenylyltransferase | - |
| PDI58_RS05260 (PDI58_05260) | rsmD | 1014661..1015203 (-) | 543 | WP_001263796.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| PDI58_RS05265 (PDI58_05265) | - | 1015273..1015662 (+) | 390 | WP_000814565.1 | hypothetical protein | - |
| PDI58_RS05270 (PDI58_05270) | - | 1015665..1015919 (-) | 255 | WP_001049150.1 | YlbG family protein | - |
| PDI58_RS05275 (PDI58_05275) | - | 1016158..1017084 (+) | 927 | WP_000757575.1 | glycerophosphodiester phosphodiesterase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17747.64 Da Isoelectric Point: 4.9816
>NTDB_id=772310 PDI58_RS05145 WP_000934768.1 1001010..1001480(-) (ssbA) [Staphylococcus aureus strain AF4005]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=772310 PDI58_RS05145 WP_000934768.1 1001010..1001480(-) (ssbA) [Staphylococcus aureus strain AF4005]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |