Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PCP51_RS02920 | Genome accession | NZ_CP115283 |
| Coordinates | 585458..586330 (-) | Length | 290 a.a. |
| NCBI ID | WP_003141356.1 | Uniprot ID | A0A0H2ZGZ1 |
| Organism | Pseudomonas aeruginosa strain F009 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 580458..591330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP51_RS02875 (PCP51_02875) | - | 581319..581489 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| PCP51_RS02880 (PCP51_02880) | - | 581515..581964 (-) | 450 | WP_003141357.1 | MOSC domain-containing protein | - |
| PCP51_RS02885 (PCP51_02885) | - | 581961..582590 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PCP51_RS02890 (PCP51_02890) | - | 582723..583148 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PCP51_RS02895 (PCP51_02895) | - | 583145..583615 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| PCP51_RS02900 (PCP51_02900) | - | 583612..584301 (+) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PCP51_RS02905 (PCP51_02905) | - | 584407..584616 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| PCP51_RS02910 (PCP51_02910) | yacG | 584653..584853 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PCP51_RS02915 (PCP51_02915) | coaE | 584850..585461 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PCP51_RS02920 (PCP51_02920) | pilD | 585458..586330 (-) | 873 | WP_003141356.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP51_RS02925 (PCP51_02925) | pilC | 586333..587550 (-) | 1218 | WP_016254080.1 | type II secretion system F family protein | Machinery gene |
| PCP51_RS02930 (PCP51_02930) | pilB | 587554..589257 (-) | 1704 | WP_003141354.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PCP51_RS02935 (PCP51_02935) | - | 589486..590025 (+) | 540 | WP_003141352.1 | pilin | - |
| PCP51_RS02940 (PCP51_02940) | - | 590089..590787 (+) | 699 | WP_016254081.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31813.85 Da Isoelectric Point: 7.7068
>NTDB_id=771231 PCP51_RS02920 WP_003141356.1 585458..586330(-) (pilD) [Pseudomonas aeruginosa strain F009]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=771231 PCP51_RS02920 WP_003141356.1 585458..586330(-) (pilD) [Pseudomonas aeruginosa strain F009]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |