Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O4546_RS12780 Genome accession   NZ_CP114590
Coordinates   2796189..2797298 (-) Length   369 a.a.
NCBI ID   WP_269587187.1    Uniprot ID   -
Organism   Salinivibrio kushneri strain TGB19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2791189..2802298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4546_RS12745 (O4546_12745) - 2791314..2791574 (-) 261 WP_096630355.1 DUF1488 family protein -
  O4546_RS12750 (O4546_12750) aroE 2791571..2792395 (-) 825 WP_269587183.1 shikimate dehydrogenase -
  O4546_RS12755 (O4546_12755) hemF 2792399..2793316 (-) 918 WP_269587184.1 oxygen-dependent coproporphyrinogen oxidase -
  O4546_RS12760 (O4546_12760) purE 2793495..2793977 (+) 483 WP_077458615.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  O4546_RS12765 (O4546_12765) - 2793982..2795130 (+) 1149 WP_269587185.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  O4546_RS12770 (O4546_12770) - 2795127..2795684 (-) 558 WP_269587186.1 type I DNA topoisomerase -
  O4546_RS12775 (O4546_12775) - 2795713..2796186 (-) 474 WP_069362355.1 DUF494 family protein -
  O4546_RS12780 (O4546_12780) dprA 2796189..2797298 (-) 1110 WP_269587187.1 DNA-processing protein DprA Machinery gene
  O4546_RS12785 (O4546_12785) - 2797288..2798349 (-) 1062 WP_269587188.1 LysM peptidoglycan-binding domain-containing protein -
  O4546_RS12790 (O4546_12790) def 2798467..2798979 (+) 513 WP_069362352.1 peptide deformylase -
  O4546_RS12795 (O4546_12795) fmt 2798987..2799931 (+) 945 WP_069362351.1 methionyl-tRNA formyltransferase -
  O4546_RS12800 (O4546_12800) rsmB 2800034..2801320 (+) 1287 WP_269587189.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39955.92 Da        Isoelectric Point: 7.1380

>NTDB_id=766698 O4546_RS12780 WP_269587187.1 2796189..2797298(-) (dprA) [Salinivibrio kushneri strain TGB19]
MDDKSLRGWLTLTQVPRLRVSQRRALLAKVPIDALCDQTHYELAAVGLTAEQCQAITHPNHAMIERSLKWARQDNCHLIG
FDHPAYPALLREISRPPLVLYVQGDLSCLAMPQLAMVGSRHATPQGLETAYQFAKQLVEHGVAITSGLALGIDGRAHKGA
LEGGGKTLAVLGSGLANVYPARHRALAKRIEAQGALVSEFWPDAPPRAEHFPRRNRLISGLSAGVLVVEAAPQSGSLITA
RYALEQNRSVFAIPGPIDQVQSRGCHQLIKQGAVLVDCVDDIISDVDSLVQFAVSQQHELFSDAPKLDTHEGLPFSALLA
NVGTNATCVDVMAERCNQPVHEIMMQLLDLELQGLVAAVPGGYVRTRRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=766698 O4546_RS12780 WP_269587187.1 2796189..2797298(-) (dprA) [Salinivibrio kushneri strain TGB19]
ATGGACGATAAATCGCTGCGAGGATGGTTGACGCTGACCCAAGTGCCGCGGTTGCGCGTCTCGCAACGGCGCGCGCTGTT
GGCCAAAGTGCCCATCGATGCGTTATGTGACCAAACGCATTATGAGCTTGCCGCGGTTGGCTTAACCGCTGAGCAATGTC
AGGCGATCACCCACCCCAACCATGCCATGATTGAACGCAGCCTTAAGTGGGCGAGGCAAGATAATTGCCACCTTATTGGC
TTTGATCATCCTGCCTACCCGGCACTACTCAGAGAAATCTCACGGCCACCTTTGGTCTTGTATGTGCAAGGGGATCTCTC
TTGCTTGGCGATGCCCCAGTTGGCGATGGTGGGCAGCCGTCACGCGACCCCACAAGGTTTAGAGACAGCGTATCAATTTG
CTAAACAACTGGTTGAGCATGGTGTTGCGATTACCAGTGGGCTTGCGCTTGGCATTGATGGCCGGGCACACAAAGGCGCA
CTTGAAGGCGGCGGTAAGACTTTGGCGGTGTTGGGAAGCGGACTTGCCAATGTGTATCCCGCGCGACATCGCGCATTGGC
CAAGCGAATTGAAGCGCAAGGGGCTCTGGTTTCCGAGTTTTGGCCAGACGCGCCGCCAAGGGCCGAACACTTTCCGCGCC
GCAATCGACTGATCAGTGGGTTGTCGGCGGGTGTATTGGTGGTAGAGGCCGCACCGCAAAGTGGGTCACTGATCACGGCG
CGTTATGCGCTAGAGCAAAACCGGAGTGTGTTTGCGATTCCCGGTCCCATTGACCAAGTCCAATCGCGCGGTTGCCACCA
ATTGATCAAACAAGGTGCGGTGTTAGTTGACTGTGTTGATGATATTATAAGTGATGTGGATAGCTTGGTGCAGTTTGCTG
TGAGTCAGCAACATGAATTATTTAGTGATGCACCCAAGTTAGATACGCACGAAGGATTGCCATTTTCTGCGCTGTTGGCT
AACGTAGGGACTAACGCGACGTGTGTCGACGTAATGGCTGAGCGCTGCAACCAACCGGTTCACGAAATCATGATGCAGTT
GTTAGACTTAGAACTCCAGGGGCTTGTAGCAGCAGTACCCGGTGGCTATGTCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.033

100

0.52
  dprA Vibrio cholerae strain A1552

50

100

0.507
  dprA Glaesserella parasuis strain SC1401

44.444

100

0.444
  dprA Legionella pneumophila strain ERS1305867

43.132

98.645

0.425
  dprA Haemophilus influenzae Rd KW20

42.773

91.87

0.393
  dprA Acinetobacter baumannii D1279779

40.663

89.973

0.366
  dprA Acinetobacter baumannii strain A118

40.361

89.973

0.363