Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N8M53_RS12685 Genome accession   NZ_CP114588
Coordinates   2757761..2758870 (-) Length   369 a.a.
NCBI ID   WP_420066614.1    Uniprot ID   -
Organism   Salinivibrio kushneri strain TGB11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2752761..2763870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8M53_RS12650 (N8M53_12650) - 2752886..2753146 (-) 261 WP_096630355.1 DUF1488 family protein -
  N8M53_RS12655 (N8M53_12655) aroE 2753143..2753967 (-) 825 WP_269579021.1 shikimate dehydrogenase -
  N8M53_RS12660 (N8M53_12660) hemF 2753971..2754888 (-) 918 WP_241836833.1 oxygen-dependent coproporphyrinogen oxidase -
  N8M53_RS12665 (N8M53_12665) purE 2755067..2755549 (+) 483 WP_069362358.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  N8M53_RS12670 (N8M53_12670) - 2755554..2756702 (+) 1149 WP_269579022.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  N8M53_RS12675 (N8M53_12675) - 2756699..2757256 (-) 558 WP_077673940.1 type I DNA topoisomerase -
  N8M53_RS12680 (N8M53_12680) - 2757285..2757758 (-) 474 WP_046074885.1 DUF494 family protein -
  N8M53_RS12685 (N8M53_12685) dprA 2757761..2758870 (-) 1110 WP_420066614.1 DNA-processing protein DprA Machinery gene
  N8M53_RS12690 (N8M53_12690) - 2758860..2759921 (-) 1062 WP_269579024.1 LysM peptidoglycan-binding domain-containing protein -
  N8M53_RS12695 (N8M53_12695) def 2760039..2760551 (+) 513 WP_269579025.1 peptide deformylase -
  N8M53_RS12700 (N8M53_12700) fmt 2760559..2761503 (+) 945 WP_269579026.1 methionyl-tRNA formyltransferase -
  N8M53_RS12705 (N8M53_12705) rsmB 2761606..2762892 (+) 1287 WP_269579027.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39932.91 Da        Isoelectric Point: 6.9914

>NTDB_id=766667 N8M53_RS12685 WP_420066614.1 2757761..2758870(-) (dprA) [Salinivibrio kushneri strain TGB11]
MRDKSLRGWLILTQVPRLRVSQRRALLAKMPIDALSEQTAHELAAVGLTAEQCQAITHPNHAMIERSLEWARQENCHLIG
FDHPAYPALLREIARPPLVLYVQGDLACLAMPQLAMVGSRHATPQGLETAYQFAKQLVEHGVAITSGLALGIDGRAHKGA
LEGHGKTLAVLGSGLANVYPARHRALAERIEAQGALVSEFWPDAPPRAEHFPRRNRLISGLSAGVLVVEAAPQSGSLITA
RYALEQNRSVFAIPGPIGQVQSRGCHQLIKQGAVLVDCVDDIISDVDSLVQFAASQQHELFSDAPKLDTYEGLPFSALLA
NVGTNATCVDVLAERCNQPVHEIMMQLLDLELQGLVAAVPGGYVRTRRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=766667 N8M53_RS12685 WP_420066614.1 2757761..2758870(-) (dprA) [Salinivibrio kushneri strain TGB11]
ATGCGCGATAAATCCCTACGAGGGTGGTTGATACTGACCCAAGTGCCGCGGTTGCGCGTCTCTCAGCGACGCGCGCTGTT
GGCTAAAATGCCCATCGACGCGTTGAGTGAGCAAACTGCTCATGAGCTTGCCGCGGTTGGCTTAACCGCTGAGCAATGTC
AGGCCATCACGCACCCCAACCATGCCATGATTGAGCGTAGTCTTGAGTGGGCGAGGCAAGAGAATTGCCACCTGATTGGC
TTTGACCACCCGGCTTACCCTGCATTACTTCGAGAAATCGCACGGCCGCCTTTGGTCTTGTATGTGCAAGGCGATCTGGC
TTGCTTGGCGATGCCTCAATTGGCGATGGTGGGCAGTCGTCACGCGACGCCGCAAGGGCTAGAAACGGCGTATCAATTTG
CCAAACAACTGGTTGAGCATGGTGTTGCGATTACCAGTGGGCTTGCGCTCGGCATTGACGGCCGAGCACACAAAGGCGCA
CTAGAGGGTCACGGTAAGACATTAGCGGTACTAGGAAGCGGGCTTGCCAATGTGTATCCCGCGCGACATCGCGCATTGGC
TGAGCGGATTGAAGCACAAGGCGCACTGGTCTCAGAGTTTTGGCCAGACGCGCCGCCAAGGGCTGAGCACTTTCCGCGCC
GCAATCGACTGATCAGTGGGTTGTCGGCAGGCGTATTAGTGGTAGAGGCCGCGCCGCAAAGTGGGTCGTTGATCACGGCA
CGCTATGCACTTGAGCAAAACCGGAGTGTGTTTGCCATTCCCGGTCCCATAGGACAAGTCCAATCGCGCGGTTGCCACCA
ATTGATAAAACAAGGTGCGGTGTTAGTCGACTGTGTTGATGATATTATAAGTGATGTGGATAGCTTGGTGCAGTTTGCAG
CGAGTCAGCAACACGAATTATTTAGTGATGCACCCAAGTTAGATACATATGAAGGATTGCCATTTTCTGCGCTGTTGGCT
AACGTAGGGACTAACGCGACGTGTGTCGACGTACTGGCTGAGCGCTGCAACCAACCGGTTCACGAAATCATGATGCAGTT
GTTAGACTTAGAACTCCAGGGGCTTGTAGCAGCAGTACCCGGTGGCTATGTCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

51.762

100

0.518
  dprA Vibrio cholerae strain A1552

50.535

100

0.512
  dprA Glaesserella parasuis strain SC1401

43.631

100

0.436
  dprA Legionella pneumophila strain ERS1305867

43.407

98.645

0.428
  dprA Haemophilus influenzae Rd KW20

43.953

91.87

0.404
  dprA Acinetobacter baumannii D1279779

41.246

91.328

0.377
  dprA Acinetobacter baumannii strain A118

40.95

91.328

0.374