Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TthTMY_RS01065 Genome accession   NZ_AP025158
Coordinates   180199..181683 (+) Length   494 a.a.
NCBI ID   WP_096411587.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 175199..186683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS01040 (TthTMY_01980) - 175808..176110 (-) 303 WP_038040591.1 proton-translocating transhydrogenase family protein -
  TthTMY_RS01045 (TthTMY_01990) - 176110..177237 (-) 1128 WP_096411584.1 NAD(P) transhydrogenase subunit alpha -
  TthTMY_RS01050 (TthTMY_02000) - 177358..178245 (+) 888 WP_223903527.1 DMT family transporter -
  TthTMY_RS01055 (TthTMY_02010) - 178242..179054 (+) 813 WP_223903332.1 DMT family transporter -
  TthTMY_RS01060 (TthTMY_02020) - 179056..180186 (+) 1131 WP_096411586.1 MFS transporter -
  TthTMY_RS01065 (TthTMY_02030) comM 180199..181683 (+) 1485 WP_096411587.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TthTMY_RS01070 (TthTMY_02040) - 181680..183692 (-) 2013 WP_223903333.1 molybdopterin oxidoreductase family protein -
  TthTMY_RS01075 (TthTMY_02050) - 183698..185242 (-) 1545 WP_096411589.1 polyhydroxybutyrate depolymerase -
  TthTMY_RS01080 (TthTMY_02060) - 185265..185876 (+) 612 WP_096411590.1 ribonuclease HII -
  TthTMY_RS01085 (TthTMY_02070) - 185916..186395 (+) 480 WP_223903334.1 DUF4384 domain-containing protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52909.26 Da        Isoelectric Point: 8.4732

>NTDB_id=76423 TthTMY_RS01065 WP_096411587.1 180199..181683(+) (comM) [Thermus thermophilus strain TMY]
MLAQVRSYALFGLEAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPIEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLRGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=76423 TthTMY_RS01065 WP_096411587.1 180199..181683(+) (comM) [Thermus thermophilus strain TMY]
ATGCTGGCCCAGGTGCGAAGCTACGCCCTCTTCGGTCTGGAGGCGGTTCCCGTCACCGTGGAGGTGGACGTTAGCCCCGG
GCTTCCCAGCTACGCCCTGGTGGGCCTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGAGGGTGCGGGCCGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCATAGAGGCCCTCTCCCCCTTCGCCCTTGCGGG
GGAGCTCGGCCTGGACGGGAGCTTGAGGCCCGTTCCCGGGGCGGTGAACCTGGCCCTGGGGGCCTTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAGGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAGGCGGTGGAGGCGCT
GGACCTCAGGGACGTCAAGGGCCAGGCCAAGGCCAAGCGGGCCCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGGAAGACCATGCTGGCCAGGCGGCTTCCTTTCCTCCTCCCGCCCCTTTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGGGGCTTGTGAAGGCCCCGCCCTTCCGCGCCCC
GCACCACACGGTGAGCTACGCCGGGCTCATCGGGGGCGGGGCCATCCCCAAGCCCGGGGAGGTCTCCTTGGCCCACCGGG
GGGTGCTCTTCCTGGACGAGTTCCCCGAGTTCTCCCGGGAGGCCCTCGAGGCCCTCCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTTCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGCGGCGCTACGCGGCCCGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCGCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCGGAAGGGGAG
GGCACGGAGGCGGTGCGGGAAAGGGTCTTGAGGGCCCGGGAGAGGATGCTCGCCCGCCAGGGGAGGCCCAACGGGCTTCT
CTCGGGGCGGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGGATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTTTTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

48.583

100

0.486
  comM Vibrio cholerae strain A1552

48.583

100

0.486
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  comM Glaesserella parasuis strain SC1401

46.429

100

0.474
  comM Acinetobacter baylyi ADP1

47.658

99.393

0.474
  comM Vibrio campbellii strain DS40M4

46.559

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.46
  comM Legionella pneumophila str. Paris

44.489

100

0.449
  comM Legionella pneumophila strain ERS1305867

44.489

100

0.449

Multiple sequence alignment