Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   OIY87_RS08560 Genome accession   NZ_CP113954
Coordinates   1708773..1709483 (-) Length   236 a.a.
NCBI ID   WP_009854646.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703773..1714483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS08545 (OIY87_09860) rnc 1705426..1706112 (-) 687 WP_009854642.1 ribonuclease III -
  OIY87_RS08550 (OIY87_09865) vicX 1706618..1707427 (-) 810 WP_009854644.1 MBL fold metallo-hydrolase Regulator
  OIY87_RS08555 (OIY87_09870) vicK 1707428..1708780 (-) 1353 WP_009854645.1 cell wall metabolism sensor histidine kinase VicK Regulator
  OIY87_RS08560 (OIY87_09875) vicR 1708773..1709483 (-) 711 WP_009854646.1 response regulator YycF Regulator
  OIY87_RS08565 (OIY87_09880) - 1709788..1710552 (+) 765 WP_009854647.1 amino acid ABC transporter ATP-binding protein -
  OIY87_RS08570 (OIY87_09885) - 1710563..1711375 (+) 813 WP_269724884.1 transporter substrate-binding domain-containing protein -
  OIY87_RS08575 (OIY87_09890) - 1711392..1712096 (+) 705 WP_009854649.1 amino acid ABC transporter permease -
  OIY87_RS08580 (OIY87_09895) - 1712108..1712755 (+) 648 WP_012962237.1 amino acid ABC transporter permease -
  OIY87_RS08585 (OIY87_09900) - 1712847..1713455 (-) 609 WP_009854651.1 TVP38/TMEM64 family protein -
  OIY87_RS08590 (OIY87_09905) - 1713703..1714005 (-) 303 WP_009854652.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27150.94 Da        Isoelectric Point: 4.6512

>NTDB_id=763837 OIY87_RS08560 WP_009854646.1 1708773..1709483(-) (vicR) [Streptococcus gallolyticus strain XH2168]
MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIE
LTHREFELLHHLATHMGQVMTREYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=763837 OIY87_RS08560 WP_009854646.1 1708773..1709483(-) (vicR) [Streptococcus gallolyticus strain XH2168]
ATGAAAAAAATTCTTATCGTTGATGATGAAAAACCAATTTCGGATATTATTAAATTTAATTTAACTAAAGAAGGTTATGA
AACCGTAACGGCTTTTGATGGTCGTGAAGCTATTACAAAGTTTGAGGAAGAAGATCCAGATTTGATTATCTTGGATTTGA
TGTTGCCAGAATTGGACGGACTTGAAGTGGCTAAAGAAGTTCGCAAGACAAGTCATATTCCAATCATTATGTTGTCTGCT
AAGGATAGCGAGTTTGATAAAGTTATCGGACTTGAAATCGGTGCAGATGACTATGTAACCAAACCATTTTCAAATCGTGA
ATTGTTGGCGCGTGTTAAAGCGCACCTTCGTCGTACAGAAAATATTGAAACAGCAGTTGCTGAAGAAAATGCTTCTGCTT
CAAATTCAGAAATCACAATTGGCGACTTGAAAATCTTACCAGACGCTTTTGTGGCACAAAAACGTGGTGAAGATATCGAA
TTGACACATCGTGAGTTTGAATTGCTTCATCATTTGGCAACACATATGGGACAAGTCATGACCCGTGAATATCTTTTGGA
AACCGTTTGGGGCTATGATTATTTTGGTGATGTGCGTACGGTTGACGTAACCATTCGTCGTTTACGTGAAAAAATCGAAG
ACACACCAAGCCGTCCAGAATATATTTTGACACGTCGTGGTGTTGGGTACTACATGAAGTCATATGAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

89.831

100

0.898
  micA Streptococcus pneumoniae Cp1015

77.778

99.153

0.771
  covR Streptococcus salivarius strain HSISS4

47.845

98.305

0.47
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.121

98.305

0.453
  scnR Streptococcus mutans UA159

37.288

100

0.373