NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	OIY87_RS03550	Genome accession	NZ_CP113954
Coordinates	657886..658551 (+)	Length	221 a.a.
NCBI ID	WP_269725185.1	Uniprot ID	-
Organism	Streptococcus gallolyticus strain XH2168
Function	dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 652886..663551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIY87_RS03530 (OIY87_04835)	-	654305..655885 (+)	1581	WP_234756072.1	DEAD/DEAH box helicase	-
OIY87_RS03535 (OIY87_04840)	-	655929..656201 (-)	273	WP_009853764.1	GIY-YIG nuclease family protein	-
OIY87_RS03540 (OIY87_04845)	-	656176..656937 (-)	762	WP_064592551.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
OIY87_RS03545 (OIY87_04850)	-	657045..657791 (+)	747	WP_009853766.1	lysophospholipid acyltransferase family protein	-
OIY87_RS03550 (OIY87_04855)	comEA	657886..658551 (+)	666	WP_269725185.1	helix-hairpin-helix domain-containing protein	Machinery gene
OIY87_RS03555 (OIY87_04860)	comEC/celB	658544..660775 (+)	2232	WP_269725186.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
OIY87_RS03560 (OIY87_04865)	-	660837..661025 (+)	189	WP_074559562.1	type II toxin-antitoxin system HicA family toxin	-
OIY87_RS03565 (OIY87_04870)	-	661065..661442 (+)	378	WP_074559564.1	type II toxin-antitoxin system HicB family antitoxin	-
OIY87_RS03570 (OIY87_04875)	-	661526..662104 (+)	579	WP_013642862.1	HD domain-containing protein	-
OIY87_RS03575 (OIY87_04880)	-	662116..662838 (+)	723	WP_234756068.1	CYTH domain-containing protein	-

Sequence

Protein

Download Length: 221 a.a. Molecular weight: 23491.23 Da Isoelectric Point: 4.3235

                                >NTDB_id=763820 OIY87_RS03550 WP_269725185.1 657886..658551(+) (comEA) [Streptococcus gallolyticus strain XH2168]

MIEEIKEKLLENKMLVAVLGTILVMLIGFFAWSNVTKTTVDAQSDLPALSTTFSASSSASDLKTERSSSQTETQKVFVDI

KGAVKNEGVYELSSGSRVTDVVKLAGGFTEDADKKSVNLAEKVTDEAVIYVARVGENVAPTTTNSQANGSAQQEESSDKI

NLNTATLAELQTISGIGAKRAQDIIDYRDANGGFSSVDDLANVSGIGEKTLEKLKSEVTVD

Nucleotide

Download Length: 666 bp

                                >NTDB_id=763820 OIY87_RS03550 WP_269725185.1 657886..658551(+) (comEA) [Streptococcus gallolyticus strain XH2168]

ATGATTGAAGAAATAAAAGAAAAACTTTTGGAGAACAAAATGTTGGTAGCGGTGTTGGGAACAATACTTGTTATGTTAAT

CGGATTTTTTGCTTGGTCAAATGTGACAAAAACAACAGTGGATGCGCAAAGTGACCTACCTGCCCTAAGCACGACTTTTT

CGGCAAGTAGCAGCGCAAGTGATTTAAAAACAGAACGTTCAAGTTCGCAAACTGAAACTCAAAAAGTGTTTGTAGATATC

AAAGGCGCTGTGAAAAATGAGGGTGTTTATGAGCTTTCAAGCGGTAGCCGTGTGACAGATGTGGTCAAATTAGCAGGTGG

TTTTACAGAAGATGCTGATAAGAAGTCGGTGAATTTGGCTGAAAAAGTAACCGATGAAGCGGTGATTTATGTGGCAAGAG

TTGGTGAAAATGTTGCTCCTACAACGACTAATTCACAAGCAAATGGCAGCGCTCAACAGGAAGAAAGTTCAGATAAAATC

AATCTTAATACCGCAACTTTGGCGGAACTCCAGACGATTTCTGGCATTGGCGCCAAACGTGCCCAAGACATTATTGACTA

CCGTGATGCCAATGGTGGTTTTTCATCAGTTGATGACTTGGCGAATGTGTCTGGTATCGGAGAAAAAACACTAGAAAAGC

TAAAATCTGAGGTGACCGTTGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(157-219)

SLBB domain (SLBB)

(78-131)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Streptococcus thermophilus LMD-9	48.498	100	0.511
comEA/celA/cilE	Streptococcus mitis SK321	47.964	100	0.48
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	47.085	100	0.475
comEA/celA/cilE	Streptococcus pneumoniae Rx1	45.74	100	0.462
comEA/celA/cilE	Streptococcus pneumoniae D39	45.74	100	0.462
comEA/celA/cilE	Streptococcus pneumoniae R6	45.74	100	0.462
comEA/celA/cilE	Streptococcus mitis NCTC 12261	45.291	100	0.457
comEA	Latilactobacillus sakei subsp. sakei 23K	37.004	100	0.38

Detailed information NTG0763820