Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDO79_RS01065 Genome accession   NZ_AP024984
Coordinates   199190..200674 (-) Length   494 a.a.
NCBI ID   WP_011174141.1    Uniprot ID   Q72GR3
Organism   Thermus thermophilus strain JCM10941     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 194190..205674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS01045 (JCM10941_01980) - 194474..194953 (-) 480 WP_011227770.1 DUF4384 domain-containing protein -
  LDO79_RS01050 (JCM10941_01990) - 194993..195604 (-) 612 WP_011227771.1 ribonuclease HII -
  LDO79_RS01055 (JCM10941_02000) - 195629..197176 (+) 1548 WP_011227772.1 polyhydroxybutyrate depolymerase -
  LDO79_RS01060 (JCM10941_02010) - 197181..199193 (+) 2013 WP_011227773.1 molybdopterin oxidoreductase family protein -
  LDO79_RS01065 (JCM10941_02020) comM 199190..200674 (-) 1485 WP_011174141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDO79_RS01070 (JCM10941_02030) - 200794..201855 (+) 1062 WP_224065221.1 Fic family protein -
  LDO79_RS01075 (JCM10941_02040) - 201837..202976 (-) 1140 WP_011227775.1 nitrate/nitrite transporter -
  LDO79_RS01080 (JCM10941_02050) - 202978..203790 (-) 813 WP_011227776.1 EamA family transporter -
  LDO79_RS01085 (JCM10941_02060) - 203787..204674 (-) 888 WP_164926022.1 DMT family transporter -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52867.22 Da        Isoelectric Point: 8.4718

>NTDB_id=76371 LDO79_RS01065 WP_011174141.1 199190..200674(-) (comM) [Thermus thermophilus strain JCM10941]
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=76371 LDO79_RS01065 WP_011174141.1 199190..200674(-) (comM) [Thermus thermophilus strain JCM10941]
ATGCTGGCCCAGGTGCGAAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGACGTTAGCCCGGG
GCTTCCCAGCTACGCCCTGGTGGGCTTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGAGGGTGCGGGCGGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCCTCGAGGCCCTCTCCCCCTTCGCCCTCGCGGG
GGAGCTTGGCTTGGACGGGAGCCTGAGGCCCGTCCCCGGGGCGGTGAACCTGGCCCTGGGGGCCCTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAAGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAAGCGGTGGAGGCGCT
GGACCTCAGGGACGTCAAGGGCCAGGCCAAGGCCAAACGCGCCCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGGAAGACCATGCTGGCGCGGCGGCTTCCCTTCCTCCTCCCGCCCCTCTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGGGGCTTGTGAAGGCCCCGCCTTTCCGCGCCCC
GCACCACACGGTGAGCTACGCTGGGCTCATCGGGGGTGGGGCCATTCCCAAGCCCGGGGAGGTCTCCTTGGCCCACCGGG
GGGTGCTCTTTCTGGACGAGTTCCCGGAGTTTTCCCGGGAGGCCCTCGAGGCCCTGCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTTCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGAGGCGCTACGCGGCCAGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCCGAGGGGGAG
GGCACGGAGGCGGTGCGGGAGCGGGTCCTAAGGGCCCGGGAGCGGATGCTCGCCCGCCAAGGGAGGCCCAACGGCCTCCT
CTCGGGGCGGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGGATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTCCTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72GR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

48.583

100

0.486
  comM Vibrio cholerae strain A1552

48.583

100

0.486
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  comM Acinetobacter baylyi ADP1

47.862

99.393

0.476
  comM Glaesserella parasuis strain SC1401

46.23

100

0.472
  comM Vibrio campbellii strain DS40M4

46.559

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.46
  comM Legionella pneumophila str. Paris

44.689

100

0.451
  comM Legionella pneumophila strain ERS1305867

44.689

100

0.451

Multiple sequence alignment