Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX71_RS08360 Genome accession   NZ_CP113919
Coordinates   2160588..2162447 (-) Length   619 a.a.
NCBI ID   WP_277159994.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0764     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2155588..2167447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX71_RS08340 (OZX71_08340) - 2156352..2156489 (-) 138 WP_277159990.1 hypothetical protein -
  OZX71_RS08345 (OZX71_08345) - 2156848..2158119 (+) 1272 WP_277159991.1 DUF4143 domain-containing protein -
  OZX71_RS08350 (OZX71_08350) - 2158168..2158356 (-) 189 WP_277159992.1 hypothetical protein -
  OZX71_RS08355 (OZX71_08355) rcrQ 2158515..2160350 (-) 1836 WP_277159993.1 ABC transporter ATP-binding protein Regulator
  OZX71_RS08360 (OZX71_08360) rcrP 2160588..2162447 (-) 1860 WP_277159994.1 ABC transporter ATP-binding protein Regulator
  OZX71_RS08365 (OZX71_08365) - 2162773..2163333 (-) 561 WP_277147511.1 MarR family transcriptional regulator -
  OZX71_RS08370 (OZX71_08370) - 2164261..2164464 (-) 204 WP_277146035.1 hypothetical protein -
  OZX71_RS08375 (OZX71_08375) - 2164853..2166430 (-) 1578 WP_277160697.1 amino acid permease -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67842.05 Da        Isoelectric Point: 5.2420

>NTDB_id=763532 OZX71_RS08360 WP_277159994.1 2160588..2162447(-) (rcrP) [Bifidobacterium sp. ESL0764]
MLRISKYLSKTEIGQMLLSLAFIAGQVFFDLKLPDYMSKVTALVETPGSQMADIWKEGGKMLLVSLGSVVCAIAVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMNKFSTASLITRSTNDITQIQMFITMGVLLVFRAPIMAVWAIFKIAGKGFEWTVA
TAAATAIMLVFVIAIMTMVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQEAKFARVNDDLTDTQLFTTRTMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAALPADKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVMEVLDT
EPSVKSGTAREGKPGETGTVEFRNVGFAYPDTREEMLRGVSFTARRGQTIAFIGSTGSGKSTLVNLVPRFYDTTEGEVLV
DGVNVRDYDIKALRDKIGYVPQQSVMFKGTVASNVSYGDRPGDAETVEVADTSTAKGRKRELALIEGESERDELSAEQKA
DVRAASEVAQASEFVDRMDGGYEAPIAQSGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKEHAA
DATKLIVAQRVGTIMDADQIVVLDDGKVVGKGTHKELLANCEVYKEIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763532 OZX71_RS08360 WP_277159994.1 2160588..2162447(-) (rcrP) [Bifidobacterium sp. ESL0764]
ATGCTTCGTATCAGCAAATACCTCTCCAAAACGGAGATCGGGCAGATGCTGCTGAGCCTGGCGTTCATCGCCGGACAGGT
CTTTTTCGACCTGAAGCTGCCGGACTATATGTCCAAGGTGACGGCGCTGGTCGAGACGCCGGGCAGCCAAATGGCCGATA
TCTGGAAAGAGGGCGGCAAGATGCTGCTCGTCTCGCTGGGCTCCGTGGTCTGCGCCATCGCCGTCGGCTACTTCATGGCC
CGCGTCGGCGCCTCGTTCAGCCAGCGTCTGCGCTCGCTCGAGTTCCGCAAGGTCGAATCCTTCGGGCCGGCCGAGATGAA
CAAGTTCTCCACGGCCTCGCTGATCACCCGCTCCACCAACGACATCACACAGATTCAGATGTTCATCACCATGGGCGTCC
TGCTGGTCTTCCGCGCGCCGATCATGGCCGTCTGGGCCATTTTCAAGATCGCGGGCAAAGGCTTTGAATGGACGGTGGCC
ACGGCCGCTGCCACAGCGATCATGCTGGTTTTCGTCATCGCCATCATGACTATGGTCATGCCGAAGTTCCGCTCGATGCA
GCGCCTGACCGATAATATCAACGCCGTCGCCCGCGAGAACCTGACCGGCCTGCGCGTCGTCCGCGCCTACAACGCCGAGG
ACTATCAGGAAGCCAAATTCGCGCGCGTCAACGACGACCTGACCGACACCCAACTCTTCACCACCCGCACGATGGCCGCG
ATGAACCCCGTCATGTCGAGCGTGATGAACGGCCTGGGCCTCGCCATCTACTGGATCGGCGCCTACCTCATCAAGGACGC
GGCGCTGCCGGCCGATAAACTCACCGACTTCTCGAATATGGTCGTCTTCTCCAGCTACGCGATGCAGGTCATCATGGCCT
TTCTGCTCCTGAGCATGGTCTTCGTGCTCTGGCCTCGTGCCGACGTCTCCGCACAGCGCGTCATGGAGGTGCTCGACACC
GAGCCGTCCGTCAAGTCCGGCACGGCTCGCGAGGGCAAGCCGGGAGAGACCGGCACCGTCGAGTTCCGCAACGTTGGTTT
CGCGTACCCCGACACCCGCGAGGAGATGCTGCGCGGCGTCAGCTTCACCGCCCGTCGCGGCCAGACCATCGCCTTCATCG
GCTCCACCGGTTCCGGCAAATCGACGCTGGTCAACCTGGTCCCACGCTTCTACGACACCACCGAGGGCGAGGTTTTGGTC
GACGGCGTCAACGTTCGCGACTACGACATCAAGGCGTTGCGCGACAAGATCGGTTACGTGCCGCAGCAATCGGTGATGTT
CAAGGGCACTGTGGCGTCCAACGTCAGCTATGGCGACCGGCCTGGTGACGCCGAAACCGTCGAGGTGGCCGATACCTCTA
CCGCCAAGGGTCGCAAGCGTGAACTGGCGCTGATTGAGGGCGAAAGTGAGCGCGATGAGCTGAGCGCCGAGCAAAAAGCC
GATGTCCGCGCCGCAAGCGAGGTGGCGCAGGCCAGCGAGTTCGTCGACCGTATGGACGGCGGCTACGAAGCGCCGATCGC
ACAGAGCGGCTCCAACGTCTCCGGCGGTCAGAAGCAGCGCCTTTCCATCGCGCGCGCCGTCTACCGTCACCCCGAGATCA
TGGTCTTCGACGACTCGTTCAGCGCGCTCGACTTCAAGACGGACCGCGCGGTGCGCGACGCCCTGAAGGAGCATGCCGCC
GACGCCACCAAGCTCATCGTCGCCCAGCGCGTCGGCACCATCATGGACGCCGACCAGATCGTCGTGCTCGACGACGGCAA
GGTGGTGGGCAAGGGCACGCACAAGGAGCTGCTCGCCAATTGCGAGGTCTACAAGGAAATCGCCGAGTCGCAACTGAGCC
CCGACGAGCTCGCCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(61-294)

ABC transporter (ABC_tran)

(357-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.204

100

0.499