Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QMO63_RS28925 Genome accession   NZ_CP125729
Coordinates   6232286..6232882 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain SHPHC59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6227286..6237882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO63_RS28905 (QMO63_28875) aroK 6228417..6228935 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QMO63_RS28910 (QMO63_28880) pilQ 6228947..6231091 (-) 2145 WP_019726987.1 type 4a pilus secretin PilQ Machinery gene
  QMO63_RS28915 (QMO63_28885) comL/pilP 6231145..6231669 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QMO63_RS28920 (QMO63_28890) pilO 6231666..6232289 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QMO63_RS28925 (QMO63_28895) pilN 6232286..6232882 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QMO63_RS28930 (QMO63_28900) pilM 6232882..6233946 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QMO63_RS28935 (QMO63_28905) - 6234131..6236602 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=763531 QMO63_RS28925 WP_003095839.1 6232286..6232882(-) (pilN) [Pseudomonas aeruginosa strain SHPHC59]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=763531 QMO63_RS28925 WP_003095839.1 6232286..6232882(-) (pilN) [Pseudomonas aeruginosa strain SHPHC59]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369