Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX71_RS08355 Genome accession   NZ_CP113919
Coordinates   2158515..2160350 (-) Length   611 a.a.
NCBI ID   WP_277159993.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0764     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2153515..2165350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX71_RS08340 (OZX71_08340) - 2156352..2156489 (-) 138 WP_277159990.1 hypothetical protein -
  OZX71_RS08345 (OZX71_08345) - 2156848..2158119 (+) 1272 WP_277159991.1 DUF4143 domain-containing protein -
  OZX71_RS08350 (OZX71_08350) - 2158168..2158356 (-) 189 WP_277159992.1 hypothetical protein -
  OZX71_RS08355 (OZX71_08355) rcrQ 2158515..2160350 (-) 1836 WP_277159993.1 ABC transporter ATP-binding protein Regulator
  OZX71_RS08360 (OZX71_08360) rcrP 2160588..2162447 (-) 1860 WP_277159994.1 ABC transporter ATP-binding protein Regulator
  OZX71_RS08365 (OZX71_08365) - 2162773..2163333 (-) 561 WP_277147511.1 MarR family transcriptional regulator -
  OZX71_RS08370 (OZX71_08370) - 2164261..2164464 (-) 204 WP_277146035.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67185.02 Da        Isoelectric Point: 7.2101

>NTDB_id=763531 OZX71_RS08355 WP_277159993.1 2158515..2160350(-) (rcrQ) [Bifidobacterium sp. ESL0764]
MPRMRGPVEKPADFGGVMLKLVRYCRKYLPAIVVALVLGAAGTICQIIGPDQLKNMTNAIAKGLPAMVHGKPVMGAVDMG
EVTRIAWLLVGLYVGYAVLNYIQHWMMATVTQRVGQSLRRSISDKINKLPLKYFDKTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSVTLFFGSLIMMFYNNVIMTLCAIVVSLLGIVVMMLIMKYSQKYFARQQIALGDVNGHVEEMYAGHTVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMGPMMNMIGNLSFVAVCIVGGALAIDGKIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKPALLGRDPKTGKPARVRGDVEFKDVNFGYEPGKTIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGKMTIDGIDTSTVPRANVHEQFSMVLQDTWVFRGTVRENVAYAKKGVTDKQIEDA
CKAVGLDHYVRSLPQGYDTVLDDNSSLSAGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHDELLAAGGFYADLYNSQFSELVD

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763531 OZX71_RS08355 WP_277159993.1 2158515..2160350(-) (rcrQ) [Bifidobacterium sp. ESL0764]
ATGCCAAGAATGAGGGGGCCGGTCGAGAAGCCGGCCGATTTCGGCGGAGTGATGCTCAAACTGGTGCGTTACTGCCGCAA
ATACCTGCCCGCCATCGTCGTCGCGCTCGTGTTGGGCGCGGCCGGCACCATCTGCCAGATCATCGGGCCGGACCAGCTGA
AGAACATGACCAACGCCATCGCCAAAGGCCTGCCCGCCATGGTGCACGGCAAGCCGGTGATGGGCGCGGTCGACATGGGC
GAGGTCACGCGCATCGCGTGGCTGCTCGTCGGCCTGTACGTCGGTTACGCGGTGCTGAACTATATCCAGCACTGGATGAT
GGCCACCGTCACCCAGCGCGTCGGCCAGAGCCTGCGCCGCTCGATTTCCGACAAAATCAACAAACTGCCGCTCAAGTATT
TCGACAAGACCAGCTACGGCGACGTGCTCTCTCGTATTACAAACGACGTCGACGCCATCGGCCAGACGCTCGGCCAGTCG
TTGGGCATGCTGATCACCTCGGTCACGCTGTTCTTCGGCTCGCTGATCATGATGTTCTACAACAACGTCATCATGACCCT
GTGCGCCATCGTGGTCTCCCTGCTCGGCATCGTGGTGATGATGCTGATTATGAAGTACTCGCAGAAGTACTTCGCCCGCC
AGCAGATCGCACTCGGCGATGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACACCGTCGTCAAGGCCTACAACGGC
GAGGCCGACTCCATCCGCCGCTTCGAGAAGTACAACAACGACCTCTACGATTCCGCGTGGAAGAGCCAGTTCCTCTCCGG
TCTGATGGGCCCGATGATGAACATGATCGGCAACCTGAGCTTCGTGGCCGTGTGCATCGTGGGCGGGGCGCTCGCCATCG
ACGGCAAGATCGAGTTCGGCGTCATCGTGGCGTTCATGATGTACGTGCGTCTCTTCACCCAGCCGCTTTCGCAGTTCGCG
CAGGCCTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAGCGCGTCTTCGGCTTCCTCGAGGAGCCCGAGATGAGCGA
CGAGAGCAAGAAGCCCGCGCTGCTCGGCCGCGACCCGAAGACCGGCAAGCCCGCGCGTGTGCGTGGCGACGTCGAGTTCA
AGGACGTCAACTTCGGCTACGAGCCCGGCAAGACGATCATCCACGACTTCTCCGCGAGCGTCAAGGCCGGCCAGAAGGTC
GCCATTGTCGGCCCGACCGGTGCCGGCAAGTCCACCATGGTCAACCTGCTGATGCGTTTCTACGACATCGACGGCGGCAA
GATGACCATCGATGGTATCGACACCTCGACCGTCCCACGCGCCAACGTGCACGAGCAGTTCTCGATGGTGCTGCAGGACA
CGTGGGTTTTCCGCGGCACGGTACGCGAGAACGTCGCCTACGCCAAGAAGGGCGTCACCGATAAGCAGATCGAGGACGCG
TGCAAGGCCGTCGGGCTCGACCATTACGTGCGCTCGCTGCCGCAGGGTTACGACACCGTGCTCGACGATAATTCCTCGCT
TTCGGCTGGCCAGCGCCAGTTGCTGACGATCGCCCGCGCGATGGTGCAGGATGCGCCGATCCTGATCCTGGACGAGGCCA
CCTCGTCGGTCGACACCCGCACCGAGGAGCTGATCCAGAAGGCGATGGACGCGCTGACGGTGGGCCGCACGAGCTTCGTG
ATCGCGCATCGCCTCTCGACGATCAAGGACGCGGACATGATTCTGGTGATGAACCACGGCGACATCGTCGAGCGCGGCAC
CCACGACGAGCTGCTGGCCGCCGGCGGCTTCTACGCCGACCTCTACAACAGTCAGTTCTCCGAGCTGGTCGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-316)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.453

96.727

0.507