Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OXH62_RS19495 Genome accession   NZ_CP113803
Coordinates   4226149..4228227 (+) Length   692 a.a.
NCBI ID   WP_375744999.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain YJY915     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4221149..4233227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH62_RS19475 (OXH62_19420) comM 4223363..4224427 (+) 1065 WP_007952389.1 pilus assembly protein PilM Machinery gene
  OXH62_RS19480 (OXH62_19425) - 4224427..4224993 (+) 567 WP_007952387.1 PilN domain-containing protein -
  OXH62_RS19485 (OXH62_19430) pilO 4224990..4225613 (+) 624 WP_085608413.1 type 4a pilus biogenesis protein PilO -
  OXH62_RS19490 (OXH62_19435) - 4225610..4226134 (+) 525 WP_085608414.1 pilus assembly protein PilP -
  OXH62_RS19495 (OXH62_19440) pilQ 4226149..4228227 (+) 2079 WP_375744999.1 type IV pilus secretin PilQ Machinery gene
  OXH62_RS19500 (OXH62_19445) aroK 4228232..4228750 (+) 519 WP_045121685.1 shikimate kinase AroK -
  OXH62_RS19505 (OXH62_19450) aroB 4228903..4230003 (+) 1101 WP_011332082.1 3-dehydroquinate synthase -
  OXH62_RS19510 (OXH62_19455) - 4230014..4231615 (+) 1602 WP_375745002.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75048.20 Da        Isoelectric Point: 5.5724

>NTDB_id=763154 OXH62_RS19495 WP_375744999.1 4226149..4228227(+) (pilQ) [Pseudomonas chlororaphis strain YJY915]
MNRIFPTLGFSLWMALLSPMVQAANLKALDVAALPGDRVELKLSFDGPPPQPKGYTTDSPARIALDLPGVASQLASKTRD
LGSGNARTATVVEANNRTRLIISLTQLAPYDTRVEGNTVFVVVGQGSKAAAPRTASRAPRAAPAAAPVRTFAPTARAIRG
VDFQRGTAGEGNVVIDLSDPAIAPDIQEHDGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNAGVSGDRATITVEPNGT
FDYSTYQTDNKLTVSIRPLTVDDLQKRNADRNSYNGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAK
VDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSN
GSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=763154 OXH62_RS19495 WP_375744999.1 4226149..4228227(+) (pilQ) [Pseudomonas chlororaphis strain YJY915]
ATGAACAGGATTTTTCCCACCCTCGGTTTTTCGCTATGGATGGCGCTGCTTTCACCGATGGTACAGGCAGCCAATCTGAA
GGCGCTGGACGTCGCGGCACTGCCGGGCGACCGGGTCGAGCTGAAGCTGTCGTTCGACGGCCCGCCCCCGCAGCCCAAGG
GCTACACCACCGATTCGCCGGCGCGGATCGCCCTCGATCTACCGGGTGTCGCCAGTCAGTTGGCGAGCAAGACCCGTGAC
CTGGGCAGCGGTAATGCCCGCACGGCCACGGTGGTCGAGGCCAATAACCGGACGCGGCTGATCATCAGCCTGACGCAACT
GGCGCCGTACGACACCCGGGTCGAAGGCAATACGGTGTTCGTGGTGGTCGGGCAGGGCAGCAAAGCCGCTGCCCCGCGTA
CGGCATCTCGTGCGCCGCGCGCAGCACCTGCGGCAGCGCCGGTCCGGACCTTTGCGCCAACCGCCAGAGCCATTCGCGGT
GTGGATTTCCAGCGTGGCACGGCGGGCGAGGGCAACGTGGTCATCGACCTGTCCGATCCAGCCATCGCACCGGATATTCA
GGAACACGACGGCAAGATCATCCTCAATTTCGCCCGTACCCAATTGCCCGAACCGCTGCGGGTGCGCCTCGACGTCAAGG
ATTTCGCCACCCCGGTGCAGTTCGTCAATGCCGGTGTCAGCGGTGATCGCGCGACGATCACCGTCGAACCCAACGGTACG
TTCGACTATTCCACTTACCAGACCGACAACAAGCTGACCGTCAGCATCCGGCCGTTGACCGTCGATGACCTGCAAAAGCG
CAACGCCGACCGCAACAGCTATAACGGCGAAAAGCTCTCTCTCAACTTCCAGGACATCGATGTGCGTTCGGTGCTGCAAC
TGATCGCCGACTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTGCAGGGCGGAATCACCTTGCGCCTGCAGAACGTG
CCGTGGGATCAGGCGCTGGATCTGGTGCTCAAGACCAAGGGCCTGGACAAACGCAAGGTCGGCAACGTGTTGCTGGTGGC
GCCGGCGGATGAAATCGCTGCGCGTGAGCGGCAGGAACTGGAGTCGCAGAAACAGATCGCCGAACTGGCGCCGTTGCGCC
GCGAGCTGCTGCAAGTGAACTACGCCAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTCACCAGCGCCGAGGCCAAG
GTCGACGAGCGGGGTTCGATCACCGTCGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGACGA
GCTGCGGCGGATCGTGGCGCAGCTGGATATCCCGGTGCGTCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCG
ATTACGACAAGAGCCTGGGCGTGCGCTGGGGCGGTTCGATTCAGAACAAGGGCAACTGGAACACTTCCGGGGTCAGCAAC
GGTTCGTCGACCACCATCGGCACGCCGGGCAGCACCAGCACCAACTCGCCGTTCGTCGACATGGGCACGGTCAACAACAC
GTCCGGGATCGGCATCGCGTTCATCACCGACAACGTCCTGCTCGACCTTGAACTGACGGCGATGGAGAAGACCGGCAACG
GCGAAATCGTCTCGCAGCCCAAAGTGGTCACCTCCGACAAGGAAACCGCGAAGATCCTCAAGGGCACCGAGATTCCGTAT
CAGGAAGCCAGCTCCAGCGGCGCTACGTCGGTGTCCTTCAAGGAGGCGTCGCTGTCGCTGGAAGTGACGCCGCAGATCAC
CCCGGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTACCGC
CGATCAAGAAAAACGAGGTCAACGCCAAGGTGCTGGTGAACGACGGCGAGACCATCGTGATTGGGGGCGTTTTCTCAAAT
ACTCAAAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

Bacterial type II and III secretion system protein (Secretin)

(527-683)

AMIN domain (AMIN)

(37-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.548

100

0.741
  comQ Acinetobacter baylyi ADP1

40.222

100

0.419
  pilQ Acinetobacter baumannii strain A118

37.517

100

0.406
  pilQ Acinetobacter baumannii D1279779

37.517

100

0.406
  pilQ Legionella pneumophila strain Lp02

37.63

97.543

0.367
  pilQ Legionella pneumophila strain ERS1305867

37.741

97.254

0.367