Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M2Z51_RS04985 Genome accession   NZ_AP024967
Coordinates   1072645..1072956 (+) Length   103 a.a.
NCBI ID   WP_248532090.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067645..1077956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS04970 (V130003_09720) lon 1067682..1070042 (+) 2361 WP_001047611.1 endopeptidase La -
  M2Z51_RS04975 (V130003_09730) - 1070226..1070498 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  M2Z51_RS04980 (V130003_09740) ppiD 1070651..1072510 (+) 1860 WP_032476350.1 peptidylprolyl isomerase -
  M2Z51_RS04985 (V130003_09750) comEA 1072645..1072956 (+) 312 WP_248532090.1 ComEA family DNA-binding protein Machinery gene
  M2Z51_RS04990 (V130003_09760) cmk 1073139..1073816 (+) 678 WP_000094751.1 (d)CMP kinase -
  M2Z51_RS04995 (V130003_09770) rpsA 1073925..1075595 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  M2Z51_RS05000 (V130003_09780) ihfB 1075884..1076162 (+) 279 WP_000167341.1 integration host factor subunit beta -
  M2Z51_RS05005 (V130003_09790) - 1076301..1076582 (+) 282 WP_000691492.1 LapA family protein -
  M2Z51_RS05010 (V130003_09800) lapB 1076594..1077763 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10965.83 Da        Isoelectric Point: 6.9776

>NTDB_id=76313 M2Z51_RS04985 WP_248532090.1 1072645..1072956(+) (comEA) [Vibrio cholerae strain V130003]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVKEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=76313 M2Z51_RS04985 WP_248532090.1 1072645..1072956(+) (comEA) [Vibrio cholerae strain V130003]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAAAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

99.029

100

0.99
  comEA Vibrio cholerae strain A1552

99.029

100

0.99
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

59.574

91.262

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437
  comEA Streptococcus thermophilus LMD-9

37.624

98.058

0.369