Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   OQG81_RS02795 Genome accession   NZ_CP113440
Coordinates   507558..508220 (+) Length   220 a.a.
NCBI ID   WP_265643954.1    Uniprot ID   A0AA47FEX1
Organism   Streptococcus macedonicus strain E37     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502558..513220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS02770 (OQG81_02770) - 502668..504068 (+) 1401 WP_014294073.1 Cof-type HAD-IIB family hydrolase -
  OQG81_RS02775 (OQG81_02775) - 504068..504424 (+) 357 WP_014294074.1 S1 RNA-binding domain-containing protein -
  OQG81_RS02780 (OQG81_02780) cysK 504544..505473 (-) 930 WP_014294075.1 cysteine synthase A -
  OQG81_RS02785 (OQG81_02785) - 505577..506203 (-) 627 WP_014294076.1 YigZ family protein -
  OQG81_RS02790 (OQG81_02790) comFA/cflA 506260..507561 (+) 1302 WP_014294077.1 DEAD/DEAH box helicase Machinery gene
  OQG81_RS02795 (OQG81_02795) comFC/cflB 507558..508220 (+) 663 WP_265643954.1 ComF family protein Machinery gene
  OQG81_RS02800 (OQG81_02800) hpf 508296..508844 (+) 549 WP_014294079.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25868.08 Da        Isoelectric Point: 9.4282

>NTDB_id=762286 OQG81_RS02795 WP_265643954.1 507558..508220(+) (comFC/cflB) [Streptococcus macedonicus strain E37]
MICLLCEQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDIHCPNCYRNGFAQQCLDCQSWEKKHHHVFHEALFTYNS
SMKNYFSKYKFQGDILLSHVFSKEIKQALKKYKNYTVVPVPISPKRLKERQFNQVTALLQAAKISYEDLLIKIEIRKQSD
KTRKERLETLNPFSFKNISKVPENILIIDDIYTTGATLKGIYQLFYENGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=762286 OQG81_RS02795 WP_265643954.1 507558..508220(+) (comFC/cflB) [Streptococcus macedonicus strain E37]
ATGATTTGCCTGCTCTGCGAACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTTATCTTAATGAAAAAAGATGACAA
CGGCGTGTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGACATTCATTGCCCAAACTGTTACCGCAACGGCTTTG
CTCAGCAATGCTTAGATTGTCAATCATGGGAAAAAAAGCATCACCATGTGTTTCATGAAGCACTTTTTACTTACAACTCT
TCAATGAAAAACTATTTTTCAAAATATAAATTTCAAGGAGATATTCTTTTAAGTCACGTTTTTTCAAAGGAAATCAAACA
AGCATTAAAAAAATATAAAAACTACACCGTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCACTTTTACAAGCAGCTAAAATCTCCTATGAAGACTTACTAATCAAGATAGAAATCAGAAAACAGTCCGAT
AAAACACGAAAGGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTTAAAAATATTTCAAAAGTGCCAGAAAATATTTTGAT
TATTGATGATATTTACACAACTGGCGCTACTTTAAAGGGAATATACCAGCTTTTCTATGAAAATGGCGCAAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

49.545

100

0.495
  comFC/cflB Streptococcus pneumoniae TIGR4

49.091

100

0.491
  comFC/cflB Streptococcus pneumoniae Rx1

49.091

100

0.491
  comFC/cflB Streptococcus pneumoniae D39

49.091

100

0.491
  comFC/cflB Streptococcus pneumoniae R6

49.091

100

0.491
  comFC/cflB Streptococcus mitis SK321

48.636

100

0.486
  comFC Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.364