Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   OQG81_RS02790 Genome accession   NZ_CP113440
Coordinates   506260..507561 (+) Length   433 a.a.
NCBI ID   WP_014294077.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain E37     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 501260..512561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS02765 (OQG81_02765) - 501905..502549 (+) 645 WP_009853571.1 response regulator transcription factor -
  OQG81_RS02770 (OQG81_02770) - 502668..504068 (+) 1401 WP_014294073.1 Cof-type HAD-IIB family hydrolase -
  OQG81_RS02775 (OQG81_02775) - 504068..504424 (+) 357 WP_014294074.1 S1 RNA-binding domain-containing protein -
  OQG81_RS02780 (OQG81_02780) cysK 504544..505473 (-) 930 WP_014294075.1 cysteine synthase A -
  OQG81_RS02785 (OQG81_02785) - 505577..506203 (-) 627 WP_014294076.1 YigZ family protein -
  OQG81_RS02790 (OQG81_02790) comFA/cflA 506260..507561 (+) 1302 WP_014294077.1 DEAD/DEAH box helicase Machinery gene
  OQG81_RS02795 (OQG81_02795) comFC/cflB 507558..508220 (+) 663 WP_265643954.1 ComF family protein Machinery gene
  OQG81_RS02800 (OQG81_02800) hpf 508296..508844 (+) 549 WP_014294079.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49166.35 Da        Isoelectric Point: 9.9437

>NTDB_id=762285 OQG81_RS02790 WP_014294077.1 506260..507561(+) (comFA/cflA) [Streptococcus macedonicus strain E37]
MDKLDNYYGRLFTQAQLSDALKKQTKQLPAMTKLNHHYVCNRCGSQVSLQNKLQTNVFYCRICLVFGRNTSNGHLYYFPQ
KCFSKKNSLIWKGKLTPYQDDVSKGMLEGIDAKKDLLIHAVTGAGKTEMIYQSVSKIIDDGGCVCLASPRIDVCLELYKR
LSRDFSCPITLLHGDSESYKRAPLIIATTHQLLKFYQAFDLLIIDEVDAFPFVDNAVLYHAVDKATKPNGTKIFLTATST
DELDKKVKTGTLTKLHLARRFHANPLVVPQKIWLSGILSNMQKKKIPQKLINLLKKQRQTRYPLLIFFPNIEQGEAFTQI
LQTYFPEEQIAFVSSKTENRLEIVEKFRKQELSILVTTTILERGVTFPCVDVFVVLANHRLYTKSALVQISGRVGRAAER
PTGELLFLHDGSTKEMRKAITEIKAMNKKGGFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=762285 OQG81_RS02790 WP_014294077.1 506260..507561(+) (comFA/cflA) [Streptococcus macedonicus strain E37]
ATGGATAAACTGGATAATTATTATGGAAGACTATTTACACAAGCTCAACTTTCGGATGCCTTAAAAAAACAGACTAAACA
GTTACCAGCAATGACAAAATTAAATCATCATTATGTTTGCAATCGTTGTGGTAGTCAAGTATCTTTACAAAACAAACTTC
AAACAAACGTTTTTTATTGTCGAATTTGCCTTGTTTTTGGAAGAAATACGAGTAATGGACATCTCTATTATTTTCCACAA
AAATGTTTTTCTAAAAAAAATTCTCTTATTTGGAAAGGAAAATTGACTCCTTACCAAGATGACGTTTCAAAAGGGATGTT
AGAAGGTATTGATGCTAAGAAAGATCTACTTATTCATGCTGTTACAGGTGCTGGAAAAACAGAAATGATTTACCAATCTG
TATCCAAAATAATTGATGACGGTGGTTGTGTTTGCCTAGCAAGTCCGCGAATTGATGTTTGTCTGGAACTTTATAAACGC
TTGTCACGTGATTTTTCGTGTCCGATTACATTGCTTCATGGAGATTCTGAGTCCTACAAACGTGCCCCTTTAATCATTGC
CACAACACATCAACTTTTAAAATTTTACCAAGCTTTTGATTTGTTAATTATTGATGAAGTTGATGCCTTTCCATTTGTGG
ATAATGCCGTGCTTTACCATGCTGTTGATAAAGCTACCAAACCTAATGGAACCAAGATTTTTTTAACAGCGACATCAACA
GATGAATTAGATAAAAAAGTAAAAACAGGAACTCTGACCAAATTGCACCTTGCTCGACGCTTTCATGCCAATCCATTAGT
TGTGCCACAAAAAATCTGGTTGTCTGGCATTTTATCCAATATGCAAAAGAAGAAAATTCCCCAGAAATTAATAAATCTTC
TGAAAAAACAACGTCAAACCCGCTATCCTTTGCTAATCTTCTTCCCAAACATCGAACAAGGAGAAGCCTTTACTCAAATT
TTACAAACTTACTTTCCAGAAGAACAAATCGCTTTTGTGTCTAGTAAAACAGAAAATCGCTTAGAAATTGTAGAAAAATT
TAGGAAACAAGAACTTTCTATTTTGGTTACAACAACCATTTTAGAACGTGGTGTCACTTTCCCATGCGTAGATGTTTTTG
TAGTGCTTGCCAATCATAGATTATATACCAAAAGCGCGCTAGTTCAGATTTCAGGGCGAGTTGGGAGAGCAGCAGAGCGT
CCAACAGGAGAACTGTTATTCTTGCATGACGGTAGCACTAAAGAAATGAGAAAAGCTATTACTGAAATTAAAGCGATGAA
TAAAAAAGGAGGTTTTGCATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(287-397)

DEAD/DEAH box helicase (DEAD)

(96-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

59.719

98.614

0.589
  comFA/cflA Streptococcus pneumoniae Rx1

59.719

98.614

0.589
  comFA/cflA Streptococcus pneumoniae D39

59.719

98.614

0.589
  comFA/cflA Streptococcus pneumoniae R6

59.719

98.614

0.589
  comFA/cflA Streptococcus mitis NCTC 12261

59.485

98.614

0.587
  comFA/cflA Streptococcus mitis SK321

58.782

98.614

0.58
  comFA Lactococcus lactis subsp. cremoris KW2

50.238

96.998

0.487
  comFA Latilactobacillus sakei subsp. sakei 23K

38.283

99.538

0.381