Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OUY06_RS07250 Genome accession   NZ_CP113247
Coordinates   1430386..1430838 (-) Length   150 a.a.
NCBI ID   WP_278319739.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425386..1435838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS07210 - 1425533..1425898 (+) 366 WP_011374991.1 DUF805 domain-containing protein -
  OUY06_RS07220 - 1426441..1426899 (-) 459 WP_076645258.1 laaL -
  OUY06_RS07225 - 1426954..1428150 (-) 1197 WP_011374993.1 acetate kinase -
  OUY06_RS07230 - 1428172..1429182 (-) 1011 WP_076645260.1 class I SAM-dependent methyltransferase -
  OUY06_RS07235 - 1429306..1429644 (-) 339 WP_076645262.1 hypothetical protein -
  OUY06_RS07240 comGF 1429607..1430119 (-) 513 WP_025016386.1 competence type IV pilus minor pilin ComGF Machinery gene
  OUY06_RS07245 comGE 1430094..1430399 (-) 306 WP_076645264.1 hypothetical protein Machinery gene
  OUY06_RS07250 comGD 1430386..1430838 (-) 453 WP_278319739.1 competence type IV pilus minor pilin ComGD Machinery gene
  OUY06_RS07255 comGC 1430810..1431109 (-) 300 WP_076645268.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OUY06_RS07260 comGB 1431106..1432113 (-) 1008 WP_076645270.1 type II secretion system F family protein Machinery gene
  OUY06_RS07265 comGA 1432106..1432996 (-) 891 WP_076645272.1 competence type IV pilus ATPase ComGA Machinery gene
  OUY06_RS07270 - 1433112..1433843 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OUY06_RS07275 - 1433934..1434434 (-) 501 WP_076632058.1 VanZ family protein -
  OUY06_RS07280 - 1434531..1434905 (+) 375 WP_011375004.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17468.37 Da        Isoelectric Point: 10.2280

>NTDB_id=761183 OUY06_RS07250 WP_278319739.1 1430386..1430838(-) (comGD) [Latilactobacillus sakei strain CNSC001WB]
MKAARLSKNEGFTLIEMCVVLAIVSLLSWLPIYQIKQYRAQQAEQLFLHQFETSWDAARQYVAIEPRAVRVMWDAPTHAI
TFKGAGESFRNHQLVLPETLTVSNPAEWHLINITHNKGIKPRTLKLKSTLNHREYQYKVQMMWGVLHVQK

Nucleotide


Download         Length: 453 bp        

>NTDB_id=761183 OUY06_RS07250 WP_278319739.1 1430386..1430838(-) (comGD) [Latilactobacillus sakei strain CNSC001WB]
TTGAAGGCGGCACGGTTAAGCAAAAATGAAGGTTTTACGTTGATTGAAATGTGCGTGGTCTTAGCGATTGTGAGCTTATT
AAGCTGGTTGCCGATTTATCAGATTAAGCAATATCGTGCGCAACAGGCTGAGCAGTTGTTTCTACATCAATTTGAAACGA
GTTGGGATGCAGCTCGTCAATATGTGGCAATTGAACCGCGTGCTGTCCGGGTGATGTGGGATGCACCAACACATGCAATC
ACATTTAAAGGTGCTGGTGAGTCGTTTAGAAATCATCAACTCGTATTACCAGAAACTTTAACAGTGAGTAATCCAGCCGA
ATGGCATTTAATTAATATTACTCATAATAAGGGGATCAAACCGCGCACCTTAAAGTTAAAATCAACGCTTAATCATCGTG
AATATCAGTATAAAGTCCAGATGATGTGGGGGGTATTACATGTTCAGAAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Latilactobacillus sakei subsp. sakei 23K

98

100

0.98