Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDN16_RS03245 Genome accession   NZ_AP024961
Coordinates   686127..687638 (-) Length   503 a.a.
NCBI ID   WP_027266091.1    Uniprot ID   -
Organism   Legionella pneumophila strain 80-045     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 681127..692638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN16_RS03215 (LEG80045_06100) - 681984..682748 (+) 765 WP_011214806.1 hypothetical protein -
  LDN16_RS03220 (LEG80045_06110) - 683052..683615 (+) 564 WP_010946323.1 YqgE/AlgH family protein -
  LDN16_RS03225 (LEG80045_06120) ruvX 683608..684027 (+) 420 WP_027266093.1 Holliday junction resolvase RuvX -
  LDN16_RS03230 (LEG80045_06130) - 684077..684970 (+) 894 WP_011945753.1 aspartate carbamoyltransferase catalytic subunit -
  LDN16_RS03235 (LEG80045_06140) - 685026..685352 (-) 327 WP_011945754.1 hypothetical protein -
  LDN16_RS03240 (LEG80045_06150) - 685636..686022 (-) 387 WP_027266092.1 hypothetical protein -
  LDN16_RS03245 (LEG80045_06160) comM 686127..687638 (-) 1512 WP_027266091.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDN16_RS03250 (LEG80045_06170) - 687703..687957 (-) 255 WP_027266090.1 ubiquinone biosynthesis accessory factor UbiK -
  LDN16_RS03255 (LEG80045_06180) - 688101..688439 (+) 339 WP_011213200.1 P-II family nitrogen regulator -
  LDN16_RS03260 (LEG80045_06190) - 688449..689030 (-) 582 WP_027266089.1 5-formyltetrahydrofolate cyclo-ligase -
  LDN16_RS03265 (LEG80045_06200) - 689277..689462 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  LDN16_RS03270 (LEG80045_06210) - 689476..690291 (+) 816 WP_027266088.1 aminotransferase class IV -
  LDN16_RS03275 (LEG80045_06220) - 690318..691001 (-) 684 WP_223919031.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54946.52 Da        Isoelectric Point: 7.9538

>NTDB_id=76061 LDN16_RS03245 WP_027266091.1 686127..687638(-) (comM) [Legionella pneumophila strain 80-045]
MSLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLFNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
THLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGSEEQLFLREVMSKLKLSARGYHRLLKVSRTIADMSE
CNKVILNHLQQALSYKQILHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=76061 LDN16_RS03245 WP_027266091.1 686127..687638(-) (comM) [Legionella pneumophila strain 80-045]
ATGAGTCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTGTCGCACAACCAGTATCTGTGGAAGTCCATTTATCAAA
TGGATTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACAGCAGTGAAAGAAAGTAAAGACCGCGTGCGCAGTGCCATTA
TAAATAGCCAATTCGAATTTCCATGCCGTAAAATTACCGTTAATCTTGGCCCTGCCAATTTACCTAAAACAGGAAGTGGC
TTTGACTTGCCTATTGCACTAGGGATACTCGCAGCATCGGAACAAATTCCTCTCACCAACCTGGCAAACCACGAATTTAT
TGGAGAATTGGCTTTAAGCGGCGAGCTTAGAGGGGTTTCTGCGATTATACCTGCTGTTCTTGCTGCTCATAAAGACAATC
AACATCTGATTATAGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGCCATCCAAAAGTCTTTACTGCCAATAACTTA
CGCGAAGTTTGTGATTATCTATGCCAGGGTACTTCTTTACAGAACTTACCTCCCAAACCAGATCTTTTATTTAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGCA
TTCTGCTAAGTGGCGCGCCGGGCAGTGGAAAAACGATGATGGCAAAAAGATTTAGTACCTTGCTGCCCGAGCTATCCGAA
ACACAAGCTCTCGAATGCGCAGCCATTAATTCAATTCGAGGCAAATTACCTGATTTCAGGGAATGGCGTTTGCCTCCTTT
TCGTGCACCACATCATACTGCCTCACCTGTCGCGTTAGTCGGAGGAGGCAACCCACCAAAACCCGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTATTAGAGACACTTAGAGAACCTTTAGAG
TCAGGGCATATTTGCATTTCCAGAGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATTGCAGCAATGAATCC
TTGTCCTTGTGGCCAATGGGGTAATTCACAAGCCAATTGCTTATGTACTCCTGATAGAATCAGCCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACAATTCACGCATTATCTCAAGAGGAATTAATTAAACCCAAT
ACCCATTTAGAAAAACAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
TCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGATCAGAAGAACAATTGTTTCTCCGAGAAG
TGATGAGTAAACTGAAACTGTCTGCTCGTGGTTACCATCGCTTACTAAAAGTAAGCAGGACAATTGCTGATATGAGTGAA
TGTAATAAGGTCATTCTAAACCATCTGCAACAGGCGTTATCCTATAAACAAATCTTGCATTTGCCTAAATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

97.416

100

0.974
  comM Legionella pneumophila str. Paris

97.416

100

0.974
  comM Haemophilus influenzae Rd KW20

50.197

100

0.507
  comM Vibrio cholerae strain A1552

50.298

100

0.503
  comM Vibrio cholerae O1 biovar El Tor strain E7946

50.298

100

0.503
  comM Vibrio campbellii strain DS40M4

49.703

100

0.499
  comM Acinetobacter baylyi ADP1

49.398

99.006

0.489
  comM Glaesserella parasuis strain SC1401

47.441

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.169

99.006

0.417

Multiple sequence alignment