Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LDO07_RS09940 Genome accession   NZ_AP024937
Coordinates   1817726..1818910 (-) Length   394 a.a.
NCBI ID   WP_223965754.1    Uniprot ID   -
Organism   Thermus thermophilus strain AK1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1812726..1823910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO07_RS09915 (TthAK1_19560) fabZ 1812951..1813379 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LDO07_RS09920 (TthAK1_19570) - 1813386..1814423 (-) 1038 WP_011173840.1 rod shape-determining protein -
  LDO07_RS09925 (TthAK1_19580) rny 1814435..1816159 (-) 1725 WP_014630294.1 ribonuclease Y -
  LDO07_RS09930 (TthAK1_19590) recA 1816160..1817182 (-) 1023 WP_143586689.1 recombinase RecA Machinery gene
  LDO07_RS09935 (TthAK1_19600) thpR 1817133..1817729 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  LDO07_RS09940 (TthAK1_19610) cinA 1817726..1818910 (-) 1185 WP_223965754.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  LDO07_RS09945 (TthAK1_19620) - 1818883..1819659 (-) 777 WP_223965755.1 glycine cleavage system protein T -
  LDO07_RS09950 (TthAK1_19630) - 1819699..1820748 (+) 1050 WP_223965756.1 MFS transporter -
  LDO07_RS09955 (TthAK1_19640) - 1820741..1821367 (+) 627 WP_223965757.1 HAD family phosphatase -
  LDO07_RS09960 (TthAK1_19650) - 1821353..1822438 (-) 1086 WP_223965758.1 enolase C-terminal domain-like protein -
  LDO07_RS09965 (TthAK1_19660) - 1822488..1823198 (-) 711 WP_143586699.1 hypothetical protein -
  LDO07_RS09970 (TthAK1_19670) - 1823231..1823728 (+) 498 WP_223965759.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42959.45 Da        Isoelectric Point: 7.0541

>NTDB_id=76047 LDO07_RS09940 WP_223965754.1 1817726..1818910(-) (cinA) [Thermus thermophilus strain AK1]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMKIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVREEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=76047 LDO07_RS09940 WP_223965754.1 1817726..1818910(-) (cinA) [Thermus thermophilus strain AK1]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGAAGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGAAGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCTTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363

Multiple sequence alignment