Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LDO80_RS10035 Genome accession   NZ_AP024933
Coordinates   1840732..1841916 (-) Length   394 a.a.
NCBI ID   WP_223971123.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA3-7     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835732..1846916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO80_RS10010 (TthAA37_19870) fabZ 1835957..1836385 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LDO80_RS10015 (TthAA37_19880) - 1836392..1837429 (-) 1038 WP_224065356.1 rod shape-determining protein -
  LDO80_RS10020 (TthAA37_19890) rny 1837441..1839165 (-) 1725 WP_014630294.1 ribonuclease Y -
  LDO80_RS10025 (TthAA37_19900) recA 1839166..1840188 (-) 1023 WP_143586689.1 recombinase RecA Machinery gene
  LDO80_RS10030 (TthAA37_19910) thpR 1840139..1840735 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  LDO80_RS10035 (TthAA37_19920) cinA 1840732..1841916 (-) 1185 WP_223971123.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  LDO80_RS10040 (TthAA37_19930) - 1841889..1842665 (-) 777 WP_223971126.1 glycine cleavage system protein T -
  LDO80_RS10045 (TthAA37_19940) - 1842705..1843754 (+) 1050 WP_165739135.1 MFS transporter -
  LDO80_RS10050 (TthAA37_19950) - 1843747..1844373 (+) 627 WP_143586695.1 HAD family hydrolase -
  LDO80_RS10055 (TthAA37_19960) - 1844359..1845444 (-) 1086 WP_223971131.1 enolase C-terminal domain-like protein -
  LDO80_RS10060 (TthAA37_19970) - 1845494..1846204 (-) 711 WP_143586699.1 hypothetical protein -
  LDO80_RS10065 (TthAA37_19980) - 1846237..1846734 (+) 498 WP_223965759.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42935.39 Da        Isoelectric Point: 8.2381

>NTDB_id=75989 LDO80_RS10035 WP_223971123.1 1840732..1841916(-) (cinA) [Thermus thermophilus strain AA3-7]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRTMPEANRKQAMRIPSATWLKNSRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=75989 LDO80_RS10035 WP_223971123.1 1840732..1841916(-) (cinA) [Thermus thermophilus strain AA3-7]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGTACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGGCGCACCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACTCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAAACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCCATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCCTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Competence-damaged protein (CinA)

(248-392)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.663

100

0.376
  cinA Streptococcus mitis SK321

35.422

100

0.373
  cinA Streptococcus pneumoniae TIGR4

35.422

100

0.373
  cinA Streptococcus pneumoniae R36A

35.181

100

0.371
  cinA Streptococcus pneumoniae Rx1

35.181

100

0.371
  cinA Streptococcus pneumoniae R6

35.181

100

0.371
  cinA Streptococcus pneumoniae D39

34.94

100

0.368

Multiple sequence alignment