Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   OHI04_RS05625 Genome accession   NZ_CP110849
Coordinates   1102394..1102798 (-) Length   134 a.a.
NCBI ID   WP_230593148.1    Uniprot ID   -
Organism   Lactococcus lactis strain VHProbi V60     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1097394..1107798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS05595 (OHI04_05595) - 1097550..1099082 (+) 1533 WP_039115348.1 Nramp family divalent metal transporter -
  OHI04_RS05600 (OHI04_05600) - 1099184..1100152 (+) 969 WP_003130649.1 PhoH family protein -
  OHI04_RS05605 (OHI04_05605) - 1100210..1100689 (+) 480 WP_039115350.1 NUDIX hydrolase -
  OHI04_RS05610 (OHI04_05610) ybeY 1100841..1101329 (+) 489 WP_021722516.1 rRNA maturation RNase YbeY -
  OHI04_RS05615 (OHI04_05615) - 1101313..1101768 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  OHI04_RS05620 (OHI04_05620) - 1101782..1102360 (+) 579 WP_021722515.1 nucleotidyltransferase family protein -
  OHI04_RS05625 (OHI04_05625) comFC 1102394..1102798 (-) 405 WP_230593148.1 ComF family protein Machinery gene
  OHI04_RS05630 (OHI04_05630) comFA 1103041..1104363 (-) 1323 WP_039115354.1 DEAD/DEAH box helicase Machinery gene
  OHI04_RS05635 (OHI04_05635) - 1104420..1105049 (+) 630 WP_003130660.1 YigZ family protein -
  OHI04_RS05640 (OHI04_05640) - 1105183..1105680 (+) 498 WP_003130662.1 VanZ family protein -
  OHI04_RS05645 (OHI04_05645) - 1105728..1106747 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  OHI04_RS05650 (OHI04_05650) - 1106862..1107608 (+) 747 WP_023189339.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15677.11 Da        Isoelectric Point: 9.8798

>NTDB_id=756609 OHI04_RS05625 WP_230593148.1 1102394..1102798(-) (comFC) [Lactococcus lactis strain VHProbi V60]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVIIIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=756609 OHI04_RS05625 WP_230593148.1 1102394..1102798(-) (comFC) [Lactococcus lactis strain VHProbi V60]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATAATAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

66.418

100

0.664
  comFC/cflB Streptococcus mitis SK321

45.324

100

0.47
  comFC/cflB Streptococcus mitis NCTC 12261

45.324

100

0.47
  comFC/cflB Streptococcus pneumoniae TIGR4

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae D39

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae R6

43.165

100

0.448
  comFC Bacillus subtilis subsp. subtilis str. 168

38.194

100

0.41
  comFC Latilactobacillus sakei subsp. sakei 23K

40.157

94.776

0.381