Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OOK60_RS01290 Genome accession   NZ_CP110848
Coordinates   301422..301787 (+) Length   121 a.a.
NCBI ID   WP_265902261.1    Uniprot ID   -
Organism   Trichothermofontia sichuanensis B231     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296422..306787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK60_RS01265 (OOK60_01265) - 297239..297709 (-) 471 WP_265902256.1 type II toxin-antitoxin system VapC family toxin -
  OOK60_RS01270 (OOK60_01270) - 297755..298588 (-) 834 WP_265902257.1 alpha/beta hydrolase -
  OOK60_RS01275 (OOK60_01275) - 298636..299469 (-) 834 WP_265902258.1 segregation/condensation protein A -
  OOK60_RS01280 (OOK60_01280) - 299509..299895 (-) 387 WP_265902259.1 LapA family protein -
  OOK60_RS01285 (OOK60_01285) folD 300170..301060 (+) 891 WP_265902260.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  OOK60_RS01290 (OOK60_01290) pilH 301422..301787 (+) 366 WP_265902261.1 response regulator transcription factor Machinery gene
  OOK60_RS01295 (OOK60_01295) - 301809..302351 (+) 543 WP_265902262.1 chemotaxis protein CheW -
  OOK60_RS01300 (OOK60_01300) - 302416..305382 (+) 2967 WP_265902263.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13602.80 Da        Isoelectric Point: 4.9007

>NTDB_id=756583 OOK60_RS01290 WP_265902261.1 301422..301787(+) (pilH) [Trichothermofontia sichuanensis B231]
MSLVLVVEDSVPQREMITELLKNSGLKVYVASDGVEALEQIQAQRPDLVVLDIVMPRMNGYEVCRRLKADTKTQDIPVVM
CSSKGEEFDRYWGMRQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=756583 OOK60_RS01290 WP_265902261.1 301422..301787(+) (pilH) [Trichothermofontia sichuanensis B231]
ATGAGTCTAGTGCTGGTAGTAGAAGATAGCGTGCCGCAACGCGAGATGATCACTGAGTTATTAAAGAATAGTGGTCTCAA
AGTCTATGTTGCCAGTGATGGCGTTGAAGCCCTAGAGCAGATCCAAGCACAGCGTCCTGATCTGGTCGTTTTGGACATTG
TGATGCCCCGGATGAATGGGTACGAGGTCTGTCGGCGGCTGAAGGCAGATACGAAAACCCAGGATATTCCCGTTGTCATG
TGTTCTTCCAAGGGCGAAGAGTTCGATCGCTATTGGGGGATGCGTCAGGGTGCGGATGCATACATTGCCAAACCCTTTCA
GCCAACCGAGTTGGTAGGGACCGTCAAACAGCTTTTGCGCGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

74.38

100

0.744
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  chpA Acinetobacter baumannii strain A118

39.316

96.694

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372
  pilL-C Synechocystis sp. PCC 6803

36.364

100

0.364