Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OKX00_RS00515 Genome accession   NZ_CP110666
Coordinates   99427..99936 (+) Length   169 a.a.
NCBI ID   WP_053356326.1    Uniprot ID   A0A9X1XED9
Organism   Fictibacillus sp. KU28468     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 94427..104936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKX00_RS00485 (OKX00_00485) - 94723..95457 (+) 735 WP_053356321.1 DUF554 domain-containing protein -
  OKX00_RS00490 (OKX00_00490) yyaC 95489..96112 (-) 624 WP_265409002.1 spore protease YyaC -
  OKX00_RS00495 (OKX00_00495) - 96516..97313 (+) 798 WP_265410435.1 mechanosensitive ion channel family protein -
  OKX00_RS00500 (OKX00_00500) - 97389..97586 (+) 198 WP_053356323.1 DUF951 domain-containing protein -
  OKX00_RS00505 (OKX00_00505) ychF 97833..98930 (+) 1098 WP_062238068.1 redox-regulated ATPase YchF -
  OKX00_RS00510 (OKX00_00510) rpsF 99114..99401 (+) 288 WP_053356325.1 30S ribosomal protein S6 -
  OKX00_RS00515 (OKX00_00515) ssbA 99427..99936 (+) 510 WP_053356326.1 single-stranded DNA-binding protein Machinery gene
  OKX00_RS00520 (OKX00_00520) rpsR 99994..100227 (+) 234 WP_053356327.1 30S ribosomal protein S18 -
  OKX00_RS00525 (OKX00_00525) - 100317..100538 (+) 222 WP_265409003.1 hypothetical protein -
  OKX00_RS00530 (OKX00_00530) - 100593..101036 (-) 444 WP_053356329.1 YtoQ family protein -
  OKX00_RS00535 (OKX00_00535) - 101245..102183 (+) 939 WP_053356330.1 YybS family protein -
  OKX00_RS00540 (OKX00_00540) - 102201..104174 (+) 1974 WP_265409004.1 DHH family phosphoesterase -
  OKX00_RS00545 (OKX00_00545) rplI 104171..104614 (+) 444 WP_265409005.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18689.47 Da        Isoelectric Point: 4.9222

>NTDB_id=755848 OKX00_RS00515 WP_053356326.1 99427..99936(+) (ssbA) [Fictibacillus sp. KU28468]
MLNRVILVGRLTKDPELRYTPNGVAVANFTLAVNRAFTNQQGEREADFINCVIWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNQGQRVYVTEVMAESVQFLEPKNANAGGGQQQYQSQGGNNFGGPSGDRGYGQQQQQQSQKRNNFNDDPFANDGTPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=755848 OKX00_RS00515 WP_053356326.1 99427..99936(+) (ssbA) [Fictibacillus sp. KU28468]
ATGCTAAATCGTGTAATCCTTGTTGGACGTTTAACGAAGGACCCGGAATTACGCTATACTCCAAACGGTGTGGCTGTTGC
TAACTTTACACTGGCAGTAAATCGAGCATTTACGAATCAGCAAGGTGAACGCGAAGCAGATTTCATCAACTGTGTAATCT
GGCGCAAGCCGGCTGAGAATGTGGCTAACTTCCTTAAGAAGGGGTCACTTGCCGGAGTAGACGGACGCGTTCAGACACGC
TCTTATGATAACAACCAAGGTCAGCGTGTTTACGTGACCGAAGTCATGGCAGAAAGTGTTCAATTCTTGGAGCCGAAGAA
TGCGAACGCCGGCGGAGGACAGCAGCAATACCAAAGCCAGGGCGGGAACAACTTTGGCGGGCCATCAGGTGACCGCGGTT
ATGGCCAGCAGCAACAGCAGCAGAGCCAAAAGCGCAATAACTTTAATGATGATCCATTTGCCAATGACGGCACTCCAATC
GACATCTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.556

100

0.751
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.722

0.402
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.367
  ssb Vibrio cholerae strain A1552

34.254

100

0.367
  ssb Neisseria gonorrhoeae MS11

32.62

100

0.361