Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LJ360_RS15100 Genome accession   NZ_CP110342
Coordinates   3288798..3289094 (+) Length   98 a.a.
NCBI ID   WP_091849925.1    Uniprot ID   A0A1I0CDR6
Organism   Marinobacter sp. AN1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3283798..3294094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ360_RS15080 (LJ360_15080) - 3284315..3285685 (-) 1371 WP_245742515.1 sensor histidine kinase -
  LJ360_RS15085 (LJ360_15085) - 3285704..3286408 (-) 705 WP_091849920.1 response regulator transcription factor -
  LJ360_RS15090 (LJ360_15090) - 3286596..3286943 (+) 348 WP_143066577.1 hypothetical protein -
  LJ360_RS15095 (LJ360_15095) - 3287030..3288196 (+) 1167 WP_091849924.1 GNAT family N-acetyltransferase -
  LJ360_RS15100 (LJ360_15100) comEA 3288798..3289094 (+) 297 WP_091849925.1 ComEA family DNA-binding protein Machinery gene
  LJ360_RS15105 (LJ360_15105) - 3289328..3290299 (+) 972 WP_091849927.1 DMT family transporter -
  LJ360_RS15110 (LJ360_15110) gloA 3290313..3290861 (-) 549 WP_091849929.1 lactoylglutathione lyase -
  LJ360_RS15115 (LJ360_15115) - 3291046..3292086 (+) 1041 WP_091850191.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10362.78 Da        Isoelectric Point: 4.4633

>NTDB_id=754141 LJ360_RS15100 WP_091849925.1 3288798..3289094(+) (comEA) [Marinobacter sp. AN1]
MKKIQTIIASLILALSLFASQAPAWAEEPAKPLASVININTATAEELTALDGIGESKALAIVADRDTNGPFESEGDLTRV
RGIGEATVEKNAERITTR

Nucleotide


Download         Length: 297 bp        

>NTDB_id=754141 LJ360_RS15100 WP_091849925.1 3288798..3289094(+) (comEA) [Marinobacter sp. AN1]
ATGAAAAAGATACAGACAATCATTGCTTCATTAATCCTGGCCCTGAGCCTGTTTGCCAGTCAGGCCCCGGCCTGGGCTGA
GGAACCAGCGAAGCCGCTGGCCAGCGTTATCAACATCAACACCGCAACGGCAGAGGAACTGACTGCCCTTGACGGCATCG
GTGAAAGCAAGGCATTGGCCATCGTCGCTGACCGCGACACCAATGGCCCGTTTGAATCAGAGGGCGATCTGACCCGCGTT
CGGGGCATCGGTGAAGCCACGGTAGAGAAGAATGCCGAACGCATCACCACCCGCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I0CDR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

53.465

100

0.551
  comEA Vibrio cholerae strain A1552

53.465

100

0.551
  comEA/comE1 Glaesserella parasuis strain SC1401

41.818

100

0.469
  comEA Vibrio parahaemolyticus RIMD 2210633

48.864

89.796

0.439
  comEA Vibrio campbellii strain DS40M4

46.667

91.837

0.429
  comE1/comEA Haemophilus influenzae Rd KW20

46.988

84.694

0.398