Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   OM948_RS22555 Genome accession   NZ_CP110298
Coordinates   1137703..1138116 (+) Length   137 a.a.
NCBI ID   WP_089111877.1    Uniprot ID   -
Organism   Xanthomonas citri pv. fuscans strain BRM48906     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1132703..1143116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM948_RS04705 (OM948_04705) coaE 1134078..1134689 (-) 612 WP_099802201.1 dephospho-CoA kinase -
  OM948_RS04710 (OM948_04710) - 1134703..1135566 (-) 864 WP_003491180.1 A24 family peptidase -
  OM948_RS04715 (OM948_04715) - 1135573..1136831 (-) 1259 Protein_925 type II secretion system F family protein -
  OM948_RS04720 (OM948_04720) comP 1137177..1137605 (+) 429 WP_007962467.1 pilin Machinery gene
  OM948_RS22555 pilA2 1137703..1138116 (+) 414 WP_089111877.1 pilin Machinery gene
  OM948_RS04735 (OM948_04735) pilB 1138158..1139894 (+) 1737 WP_007965359.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OM948_RS04740 (OM948_04740) pilR 1140344..1141798 (-) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14079.12 Da        Isoelectric Point: 7.6334

>NTDB_id=753976 OM948_RS22555 WP_089111877.1 1137703..1138116(+) (pilA2) [Xanthomonas citri pv. fuscans strain BRM48906]
MSRVNGFTLLELMIVVAIVGILSALALPAYQSYVIKARVAEAIILADSAKAAVTQNVNNENALTTTACAGVSGLSSPTNN
VASFTCQGAGVLTVVTTSVAGSVTLSLVPSYNSDRPVVWTCRHVSGSASYVPSDCRN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=753976 OM948_RS22555 WP_089111877.1 1137703..1138116(+) (pilA2) [Xanthomonas citri pv. fuscans strain BRM48906]
ATGAGCCGGGTAAACGGCTTCACCTTGCTCGAGCTAATGATCGTCGTGGCCATCGTCGGGATATTGTCTGCATTGGCCCT
GCCGGCTTATCAAAGTTATGTAATCAAGGCGCGCGTGGCCGAGGCCATTATTTTGGCTGACTCTGCAAAAGCTGCGGTGA
CGCAGAATGTCAATAATGAAAATGCTTTGACAACTACTGCATGTGCGGGGGTGAGCGGGCTTTCGTCTCCCACTAATAAT
GTAGCTTCTTTCACGTGCCAGGGCGCAGGAGTGCTGACTGTTGTTACGACCAGCGTTGCAGGCTCGGTAACTCTATCACT
TGTACCCAGCTACAACTCAGATCGTCCGGTAGTCTGGACTTGCCGACATGTTTCTGGATCGGCTAGCTACGTGCCTTCAG
ATTGCCGAAACTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

48.529

99.27

0.482
  pilA Ralstonia pseudosolanacearum GMI1000

40.625

100

0.474
  pilA2 Legionella pneumophila strain ERS1305867

47.794

99.27

0.474
  comP Acinetobacter baylyi ADP1

41.611

100

0.453
  pilA Haemophilus influenzae 86-028NP

35.714

100

0.365