Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OM948_RS04740 Genome accession   NZ_CP110298
Coordinates   1140344..1141798 (-) Length   484 a.a.
NCBI ID   WP_170922314.1    Uniprot ID   -
Organism   Xanthomonas citri pv. fuscans strain BRM48906     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1135344..1146798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM948_RS04715 (OM948_04715) - 1135573..1136831 (-) 1259 Protein_925 type II secretion system F family protein -
  OM948_RS04720 (OM948_04720) comP 1137177..1137605 (+) 429 WP_007962467.1 pilin Machinery gene
  OM948_RS22555 pilA2 1137703..1138116 (+) 414 WP_089111877.1 pilin Machinery gene
  OM948_RS04735 (OM948_04735) pilB 1138158..1139894 (+) 1737 WP_007965359.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OM948_RS04740 (OM948_04740) pilR 1140344..1141798 (-) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  OM948_RS04745 (OM948_04745) - 1142068..1143681 (-) 1614 WP_007965357.1 HAMP domain-containing sensor histidine kinase -
  OM948_RS04750 (OM948_04750) sucC 1143913..1145082 (+) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  OM948_RS04755 (OM948_04755) sucD 1145107..1145982 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  OM948_RS04760 (OM948_04760) - 1146157..1146358 (+) 202 Protein_933 hypothetical protein -
  OM948_RS04765 (OM948_04765) - 1146413..1146784 (+) 372 WP_099802199.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52479.25 Da        Isoelectric Point: 6.9090

>NTDB_id=753965 OM948_RS04740 WP_170922314.1 1140344..1141798(-) (pilR) [Xanthomonas citri pv. fuscans strain BRM48906]
MGHHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=753965 OM948_RS04740 WP_170922314.1 1140344..1141798(-) (pilR) [Xanthomonas citri pv. fuscans strain BRM48906]
TTGGGCCACCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGTGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471