Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Regulator |
| Locus tag | UKS_RS00305 | Genome accession | NZ_AP021887 |
| Coordinates | 57635..58984 (+) | Length | 449 a.a. |
| NCBI ID | WP_156011330.1 | Uniprot ID | - |
| Organism | Streptococcus sp. 116-D4 | ||
| Function | transport of ComC (predicted from homology) Competence regulation |
||
Genomic Context
Location: 52635..63984
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UKS_RS00265 (UKS_00490) | - | 53372..53569 (+) | 198 | WP_049497050.1 | class IIb bacteriocin, lactobin A/cerein 7B family | - |
| UKS_RS00275 (UKS_00510) | - | 53783..53938 (+) | 156 | WP_049497045.1 | smi_0061 family bacteriocin-like peptide | - |
| UKS_RS09765 | - | 53942..54145 (+) | 204 | WP_080977092.1 | bacteriocin immunity protein | - |
| UKS_RS00285 (UKS_00520) | - | 54225..54407 (+) | 183 | WP_049497042.1 | hypothetical protein | - |
| UKS_RS00290 (UKS_00530) | - | 54460..54633 (+) | 174 | WP_000180829.1 | class IIb bacteriocin, lactobin A/cerein 7B family | - |
| UKS_RS00295 (UKS_00540) | - | 54757..54909 (+) | 153 | WP_001180498.1 | class IIb bacteriocin, lactobin A/cerein 7B family | - |
| UKS_RS09685 (UKS_00550) | - | 54934..55089 (+) | 156 | WP_173020424.1 | hypothetical protein | - |
| UKS_RS00300 (UKS_00560) | comA | 55469..57622 (+) | 2154 | WP_156011329.1 | peptide cleavage/export ABC transporter ComA | Regulator |
| UKS_RS00305 (UKS_00570) | comB | 57635..58984 (+) | 1350 | WP_156011330.1 | competence pheromone export protein ComB | Regulator |
| UKS_RS00310 (UKS_00580) | purC | 59154..59861 (+) | 708 | WP_173020425.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| UKS_RS00315 (UKS_00590) | - | 60061..63786 (+) | 3726 | WP_156011332.1 | phosphoribosylformylglycinamidine synthase | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 49906.77 Da Isoelectric Point: 5.7925
>NTDB_id=75319 UKS_RS00305 WP_156011330.1 57635..58984(+) (comB) [Streptococcus sp. 116-D4]
MKPEFLESAEFYNRRYHNFSSRVIVPMSLLLVFLLGFATLAEKEISLSTRATVEPSRILANIQSTSNNRILVNHLEENKL
VKKGDLLVQYQEGAESVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQN
ETIASQNAAASQTQAEIGNLISQTEAKIRDYQTAKSAIETGASLANQNLAYSLYQSYKSQGEENPQAKSQAVAQVEAQLS
QLESNLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLDQKILEAESGKKAQGNLLDKGKITASEDGVLH
LNPETSDSTMVAEGTLLAQLYPSLEKEGKAKLTAYLSSKDVARIKVGDSVRYRTTHDAKNQLFLDSTITSIDATATKTEK
GNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGRKSYLRYYLDQFLNKE
MKPEFLESAEFYNRRYHNFSSRVIVPMSLLLVFLLGFATLAEKEISLSTRATVEPSRILANIQSTSNNRILVNHLEENKL
VKKGDLLVQYQEGAESVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQN
ETIASQNAAASQTQAEIGNLISQTEAKIRDYQTAKSAIETGASLANQNLAYSLYQSYKSQGEENPQAKSQAVAQVEAQLS
QLESNLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLDQKILEAESGKKAQGNLLDKGKITASEDGVLH
LNPETSDSTMVAEGTLLAQLYPSLEKEGKAKLTAYLSSKDVARIKVGDSVRYRTTHDAKNQLFLDSTITSIDATATKTEK
GNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGRKSYLRYYLDQFLNKE
Nucleotide
Download Length: 1350 bp
>NTDB_id=75319 UKS_RS00305 WP_156011330.1 57635..58984(+) (comB) [Streptococcus sp. 116-D4]
ATGAAACCAGAATTTTTAGAAAGTGCGGAGTTTTATAATCGTCGTTACCATAATTTTTCCAGTCGGGTGATTGTACCTAT
GTCCCTTCTGCTCGTGTTTTTACTTGGCTTTGCAACTTTAGCAGAGAAGGAGATAAGTTTGTCTACCAGAGCTACTGTCG
AGCCTAGTCGTATCCTTGCAAATATCCAATCAACTAGCAACAATCGCATTCTTGTCAATCATTTGGAAGAAAATAAGCTG
GTTAAGAAGGGGGATCTTTTGGTTCAATACCAGGAAGGGGCAGAGAGTGTCCAAGCGGAGTCTTATGCCAGTCAGTTGGA
CATGCTCAAGGATCAAAAAAAGCAATTGGAGTATTTGCAAAAAAGTCTGCAAGAAGGGGAGAACCACTTTCCAGAGGAGG
ATAAGTTTGGCTACCAAGCCACCTTTCGCGACTACATCAGTCAAGCAGGCAGTCTTAGGGCTAGTACATCGCAACAAAAT
GAGACCATCGCGTCCCAGAATGCAGCAGCTAGTCAAACCCAAGCCGAAATCGGCAACCTCATCAGTCAAACAGAGGCTAA
AATTCGTGATTACCAGACAGCTAAGTCAGCTATTGAAACAGGCGCTTCCTTGGCCAATCAGAATCTAGCCTACTCTCTCT
ACCAGTCCTATAAGTCTCAGGGCGAGGAAAATCCGCAAGCTAAATCTCAGGCTGTTGCGCAGGTAGAAGCGCAGCTTTCT
CAGTTAGAATCTAATCTTGCTACTTACCGTGTTCAGTATGCAGGTTCAGGTACCCAGCAAGCCTATGCGTCAGGCTTAAG
CAGTCAATTGGAGTCTCTCAAATCCCAACACTTGGCAAAGGTTGGTCAGGAATTGACCCTTTTAGACCAGAAAATCTTGG
AGGCAGAGTCAGGTAAGAAGGCACAGGGAAATCTTTTAGACAAGGGAAAAATCACGGCGAGTGAGGATGGGGTGCTTCAC
CTCAATCCTGAGACCAGTGACTCTACCATGGTAGCAGAGGGGACTCTACTAGCCCAACTCTATCCGTCCTTGGAAAAAGA
AGGGAAAGCCAAACTAACAGCTTATCTAAGTTCAAAAGATGTAGCAAGGATCAAGGTCGGTGATTCTGTTCGCTATAGGA
CGACTCATGATGCCAAGAATCAACTTTTCCTAGATTCTACTATTACAAGTATTGATGCGACAGCTACTAAGACTGAAAAA
GGGAATTTCTTTAAAATCGAGGCGGAGACTAATCTAACTTCGGAGCAGGCTGAAAAACTTCGGTACGGAGTGGAAGGTCG
CCTGCAGATGATTACAGGTAGGAAAAGTTATCTACGTTATTATTTGGATCAATTTTTGAACAAAGAGTAA
ATGAAACCAGAATTTTTAGAAAGTGCGGAGTTTTATAATCGTCGTTACCATAATTTTTCCAGTCGGGTGATTGTACCTAT
GTCCCTTCTGCTCGTGTTTTTACTTGGCTTTGCAACTTTAGCAGAGAAGGAGATAAGTTTGTCTACCAGAGCTACTGTCG
AGCCTAGTCGTATCCTTGCAAATATCCAATCAACTAGCAACAATCGCATTCTTGTCAATCATTTGGAAGAAAATAAGCTG
GTTAAGAAGGGGGATCTTTTGGTTCAATACCAGGAAGGGGCAGAGAGTGTCCAAGCGGAGTCTTATGCCAGTCAGTTGGA
CATGCTCAAGGATCAAAAAAAGCAATTGGAGTATTTGCAAAAAAGTCTGCAAGAAGGGGAGAACCACTTTCCAGAGGAGG
ATAAGTTTGGCTACCAAGCCACCTTTCGCGACTACATCAGTCAAGCAGGCAGTCTTAGGGCTAGTACATCGCAACAAAAT
GAGACCATCGCGTCCCAGAATGCAGCAGCTAGTCAAACCCAAGCCGAAATCGGCAACCTCATCAGTCAAACAGAGGCTAA
AATTCGTGATTACCAGACAGCTAAGTCAGCTATTGAAACAGGCGCTTCCTTGGCCAATCAGAATCTAGCCTACTCTCTCT
ACCAGTCCTATAAGTCTCAGGGCGAGGAAAATCCGCAAGCTAAATCTCAGGCTGTTGCGCAGGTAGAAGCGCAGCTTTCT
CAGTTAGAATCTAATCTTGCTACTTACCGTGTTCAGTATGCAGGTTCAGGTACCCAGCAAGCCTATGCGTCAGGCTTAAG
CAGTCAATTGGAGTCTCTCAAATCCCAACACTTGGCAAAGGTTGGTCAGGAATTGACCCTTTTAGACCAGAAAATCTTGG
AGGCAGAGTCAGGTAAGAAGGCACAGGGAAATCTTTTAGACAAGGGAAAAATCACGGCGAGTGAGGATGGGGTGCTTCAC
CTCAATCCTGAGACCAGTGACTCTACCATGGTAGCAGAGGGGACTCTACTAGCCCAACTCTATCCGTCCTTGGAAAAAGA
AGGGAAAGCCAAACTAACAGCTTATCTAAGTTCAAAAGATGTAGCAAGGATCAAGGTCGGTGATTCTGTTCGCTATAGGA
CGACTCATGATGCCAAGAATCAACTTTTCCTAGATTCTACTATTACAAGTATTGATGCGACAGCTACTAAGACTGAAAAA
GGGAATTTCTTTAAAATCGAGGCGGAGACTAATCTAACTTCGGAGCAGGCTGAAAAACTTCGGTACGGAGTGGAAGGTCG
CCTGCAGATGATTACAGGTAGGAAAAGTTATCTACGTTATTATTTGGATCAATTTTTGAACAAAGAGTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Streptococcus mitis SK321 |
96.214 |
100 |
0.962 |
| comB | Streptococcus pneumoniae Rx1 |
95.768 |
100 |
0.958 |
| comB | Streptococcus pneumoniae D39 |
95.768 |
100 |
0.958 |
| comB | Streptococcus pneumoniae R6 |
95.768 |
100 |
0.958 |
| comB | Streptococcus pneumoniae TIGR4 |
95.546 |
100 |
0.955 |
| comB | Streptococcus mitis NCTC 12261 |
95.1 |
100 |
0.951 |
| comB | Streptococcus gordonii str. Challis substr. CH1 |
56.444 |
100 |
0.566 |