Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A6764_RS01605 Genome accession   NZ_CP109943
Coordinates   282682..283140 (+) Length   152 a.a.
NCBI ID   WP_029100550.1    Uniprot ID   -
Organism   Brevibacillus sp. WF146     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 277682..288140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6764_RS01585 (A6764_01585) - 278011..278220 (+) 210 WP_029100554.1 DUF951 domain-containing protein -
  A6764_RS22305 - 278576..278665 (-) 90 WP_035290222.1 YjcZ family sporulation protein -
  A6764_RS01590 (A6764_01590) pepF 279005..280915 (+) 1911 WP_029100553.1 oligoendopeptidase F -
  A6764_RS01595 (A6764_01595) ychF 281123..282223 (+) 1101 WP_065067546.1 redox-regulated ATPase YchF -
  A6764_RS01600 (A6764_01600) rpsF 282365..282652 (+) 288 WP_029100551.1 30S ribosomal protein S6 -
  A6764_RS01605 (A6764_01605) ssbA 282682..283140 (+) 459 WP_029100550.1 single-stranded DNA-binding protein Machinery gene
  A6764_RS01610 (A6764_01610) rpsR 283198..283428 (+) 231 WP_035290218.1 30S ribosomal protein S18 -
  A6764_RS01615 (A6764_01615) - 283517..284425 (+) 909 WP_035296454.1 DUF2232 domain-containing protein -
  A6764_RS01620 (A6764_01620) - 284430..286367 (+) 1938 WP_029100547.1 DHH family phosphoesterase -
  A6764_RS01625 (A6764_01625) rplI 286432..286875 (+) 444 WP_029100546.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16461.39 Da        Isoelectric Point: 4.9719

>NTDB_id=751121 A6764_RS01605 WP_029100550.1 282682..283140(+) (ssbA) [Brevibacillus sp. WF146]
MNKVILIGNLTKDPELRYTPNGVAVATFTLAVNRPRPNQAGEREADFINIVAWQKLADLCATYLRKGRQAAVEGRIQTRS
YDNKEGKRVYVTEVVAENVQFLGGRGGEGAGYDPGFGGGKPAGGQRDDFDPFGDPFADAGKPINISDDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=751121 A6764_RS01605 WP_029100550.1 282682..283140(+) (ssbA) [Brevibacillus sp. WF146]
ATGAATAAAGTCATTCTCATCGGAAACCTGACGAAAGATCCGGAGCTGCGCTATACGCCAAACGGCGTCGCTGTTGCCAC
CTTTACCCTTGCGGTGAACCGTCCGCGCCCCAATCAGGCGGGCGAGCGGGAAGCCGACTTCATCAACATTGTCGCCTGGC
AGAAGCTGGCCGATCTGTGCGCCACGTATCTGCGCAAAGGCAGACAAGCGGCTGTCGAAGGACGCATTCAGACGCGATCC
TACGACAACAAGGAAGGAAAAAGGGTGTACGTGACAGAAGTTGTGGCGGAAAACGTCCAGTTCCTGGGCGGGCGCGGCGG
TGAAGGCGCAGGTTACGATCCCGGCTTTGGCGGCGGGAAACCGGCCGGCGGTCAGCGAGACGACTTTGATCCATTTGGAG
ATCCCTTTGCCGATGCCGGCAAGCCGATCAACATTTCGGATGACGACTTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.386

100

0.612
  ssb Latilactobacillus sakei subsp. sakei 23K

44.97

100

0.5
  ssb Neisseria gonorrhoeae MS11

36.416

100

0.414
  ssb Neisseria meningitidis MC58

35.838

100

0.408
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.545

72.368

0.395
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.382