Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   OHM51_RS06460 Genome accession   NZ_CP109941
Coordinates   1309338..1311491 (+) Length   717 a.a.
NCBI ID   WP_044773010.1    Uniprot ID   -
Organism   Streptococcus suis strain ID38828     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304338..1316491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM51_RS06415 (OHM51_06415) - 1305067..1305327 (-) 261 Protein_1216 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  OHM51_RS06420 (OHM51_06420) erm(B) 1305497..1306234 (-) 738 WP_024418925.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) -
  OHM51_RS06425 (OHM51_06425) - 1306359..1306442 (-) 84 WP_031929417.1 23S rRNA methyltransferase attenuator leader peptide ErmL -
  OHM51_RS06430 (OHM51_06430) - 1306463..1306609 (-) 147 WP_314733729.1 peptide-binding protein -
  OHM51_RS10220 - 1306589..1306714 (-) 126 Protein_1220 topoisomerase -
  OHM51_RS06435 (OHM51_06435) - 1306714..1307331 (-) 618 WP_002321671.1 recombinase family protein -
  OHM51_RS06440 (OHM51_06440) - 1307671..1307889 (-) 219 WP_044773004.1 hypothetical protein -
  OHM51_RS06445 (OHM51_06445) - 1307898..1308113 (-) 216 WP_044773006.1 hypothetical protein -
  OHM51_RS06450 (OHM51_06450) - 1308422..1308763 (-) 342 WP_044773008.1 hypothetical protein -
  OHM51_RS06455 (OHM51_06455) - 1308780..1309037 (-) 258 WP_050069063.1 hypothetical protein -
  OHM51_RS06460 (OHM51_06460) comA/nlmT 1309338..1311491 (+) 2154 WP_044773010.1 peptide cleavage/export ABC transporter Regulator
  OHM51_RS06465 (OHM51_06465) - 1311503..1312864 (+) 1362 WP_044773011.1 bacteriocin secretion accessory protein -
  OHM51_RS06470 (OHM51_06470) - 1312963..1313118 (+) 156 WP_079396462.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  OHM51_RS06475 (OHM51_06475) - 1313170..1314513 (-) 1344 WP_044773013.1 GHKL domain-containing protein -
  OHM51_RS06480 (OHM51_06480) comE/blpR 1314524..1315264 (-) 741 WP_044773016.1 response regulator transcription factor Regulator
  OHM51_RS06485 (OHM51_06485) - 1315266..1315607 (-) 342 WP_044773018.1 LytTR family DNA-binding domain-containing protein -
  OHM51_RS06490 (OHM51_06490) - 1315806..1316201 (+) 396 WP_044773019.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80638.52 Da        Isoelectric Point: 7.0160

>NTDB_id=751049 OHM51_RS06460 WP_044773010.1 1309338..1311491(+) (comA/nlmT) [Streptococcus suis strain ID38828]
MTAYKRTFVPQIDARDCGVAALASIAKFYGSDYSLAHLRELAKTNKEGTTALGIVKAAKEMGFETRAIQADMSLFDMDDV
PYPFIVHVNKEGKLQHYYVVYHNKKDHLIIGDPDPTVKVTKMTKERFASEWTGVAIFLAPEPSYKPHKDKKNGLMSFLPL
IFRQRSLIFYIVLASLLVTLINISGSYYLQGMLDEYIPNQMRSTLGILSVGLIITYILQQMMTFSRDYLLIVLSQRLSID
VILSYIRHIFELPMSFFATRRTGEVISRFTDANSIIDALASTILSLFLDVSILTIVGSVLLVQNTNLFLLSLISVPIYII
IIFAFMKPFEKMNNDVMQSNSMVSSAIIEDINGIETIKSLTSEESRYQKIDSEFVDYLDKSFNLSKYSILQGTLKQGAQL
ILNIIILWFGAQLVMNGHISVGQLITFNTLLSYFTNPLENIINLQTKLQSAKVANNRLNEVYLVESEFSNSQTLTDSQFL
TGDIRFEDLSYKYGFGRDTLSDINLTIKQGDKVSLVGISGSGKTTLAKMIVNFFEPYKGRITINNNDLKLIDKKTLRQHI
NYLPQQAYIFSGSILENLTLGANQLISQEDIIRACEIAEIRQDIEQMPMGYQTELSDGAGLSGGQKQRIALARALLTKAP
VLILDEATSGLDVLTEKKVIDNLMAMADKTIIFVAHRLSISERTNQVIVLDQGKVIETGSHHELMTKQGFYHHLFSK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=751049 OHM51_RS06460 WP_044773010.1 1309338..1311491(+) (comA/nlmT) [Streptococcus suis strain ID38828]
ATGACAGCTTACAAACGAACTTTTGTTCCTCAAATCGATGCCAGAGACTGTGGTGTAGCTGCTTTAGCTTCTATTGCCAA
GTTTTATGGCTCTGATTATTCCCTAGCTCATTTAAGAGAGTTGGCCAAAACTAATAAGGAAGGAACGACCGCTCTTGGTA
TCGTCAAGGCAGCCAAAGAAATGGGCTTCGAAACCAGGGCCATCCAGGCTGACATGAGCCTCTTTGATATGGATGACGTT
CCCTATCCCTTCATCGTTCACGTCAATAAAGAAGGAAAACTGCAACACTACTATGTGGTCTATCACAACAAAAAAGACCA
CCTCATCATTGGTGATCCTGACCCTACGGTCAAAGTCACCAAGATGACCAAGGAGCGGTTTGCTTCTGAATGGACAGGCG
TCGCTATCTTTCTGGCTCCAGAACCCAGCTATAAACCTCACAAGGATAAAAAGAACGGCCTAATGAGCTTCCTACCACTG
ATTTTCAGACAACGTTCTCTTATCTTTTATATCGTCCTGGCTAGCCTCTTGGTTACTTTAATAAATATTAGTGGTTCTTA
TTACCTCCAAGGAATGTTAGATGAATATATTCCGAACCAGATGAGGTCAACCTTGGGTATCCTCTCTGTCGGTCTTATCA
TCACCTATATCCTCCAGCAAATGATGACTTTCTCGCGAGATTACCTCTTAATCGTGCTCAGCCAACGGCTAAGTATTGAT
GTAATTCTTTCCTATATCCGTCATATCTTTGAACTGCCCATGTCCTTCTTTGCGACACGAAGGACAGGTGAGGTCATCTC
TCGCTTTACAGATGCCAATTCAATCATCGATGCCCTGGCATCGACAATTTTGTCACTTTTCCTTGATGTCTCCATTTTGA
CCATCGTTGGTAGTGTGCTTTTGGTACAAAACACCAACCTCTTCCTGCTCTCCCTCATTTCGGTTCCCATTTATATCATC
ATTATTTTTGCTTTTATGAAGCCTTTCGAAAAGATGAATAATGATGTGATGCAGAGTAACTCCATGGTCAGCTCTGCCAT
TATCGAAGATATCAACGGTATAGAAACTATCAAGTCATTGACCAGCGAAGAAAGTCGCTACCAAAAGATTGACAGCGAGT
TCGTAGACTATCTAGACAAGTCCTTTAATCTCAGTAAATACTCTATCCTACAAGGTACCCTTAAACAAGGAGCTCAGCTC
ATTCTCAATATTATCATCTTGTGGTTTGGGGCTCAGCTAGTCATGAACGGACACATTTCAGTTGGACAACTGATCACCTT
CAACACCCTTCTATCTTATTTTACCAATCCTTTAGAAAATATTATAAACCTCCAAACCAAGCTCCAGTCTGCCAAGGTGG
CTAACAATCGCCTGAATGAAGTCTACCTGGTTGAATCTGAATTCAGTAACAGTCAGACCTTAACAGATTCACAGTTCCTG
ACTGGCGATATTCGCTTTGAAGACCTTTCCTATAAGTACGGTTTCGGTCGTGACACCCTATCGGATATCAATCTGACCAT
CAAACAAGGCGATAAGGTCAGTCTAGTGGGAATTAGCGGCTCAGGAAAGACAACCTTGGCCAAGATGATTGTCAATTTCT
TTGAGCCTTACAAGGGTCGAATCACCATCAACAACAATGACCTTAAACTAATTGATAAAAAGACGCTTCGGCAACACATT
AACTACCTCCCACAACAAGCTTATATCTTCAGTGGTTCAATCTTAGAAAACTTGACTTTAGGGGCCAATCAACTGATTAG
TCAGGAAGATATTATCAGAGCTTGTGAGATCGCTGAAATTCGACAAGACATCGAGCAGATGCCTATGGGCTATCAAACAG
AATTGTCTGACGGAGCTGGCTTATCGGGTGGTCAAAAGCAACGGATTGCTTTGGCTAGGGCTCTACTGACTAAAGCCCCT
GTTCTTATTCTTGATGAAGCCACTAGCGGCCTTGATGTGCTAACGGAGAAAAAGGTCATTGATAATTTAATGGCCATGGC
AGACAAGACCATTATCTTTGTCGCACACCGCCTCAGTATTTCTGAGCGAACCAACCAAGTTATCGTTCTTGACCAAGGGA
AGGTCATTGAGACTGGTTCACATCACGAATTGATGACCAAACAAGGTTTCTACCATCATCTATTTAGCAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(500-649)

ABC transporter transmembrane region (ABC_membrane)

(168-438)

Peptidase C39 family (Peptidase_C39)

(7-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.867

99.721

0.727
  comA Streptococcus mitis NCTC 12261

68.073

99.163

0.675
  comA Streptococcus mitis SK321

67.511

99.163

0.669
  comA Streptococcus pneumoniae Rx1

67.37

99.163

0.668
  comA Streptococcus pneumoniae D39

67.37

99.163

0.668
  comA Streptococcus pneumoniae R6

67.37

99.163

0.668
  comA Streptococcus pneumoniae TIGR4

67.089

99.163

0.665
  comA Streptococcus gordonii str. Challis substr. CH1

65.035

99.721

0.649