Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   OHM51_RS06480 Genome accession   NZ_CP109941
Coordinates   1314524..1315264 (-) Length   246 a.a.
NCBI ID   WP_044773016.1    Uniprot ID   -
Organism   Streptococcus suis strain ID38828     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309524..1320264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM51_RS06465 (OHM51_06465) - 1311503..1312864 (+) 1362 WP_044773011.1 bacteriocin secretion accessory protein -
  OHM51_RS06470 (OHM51_06470) - 1312963..1313118 (+) 156 WP_079396462.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  OHM51_RS06475 (OHM51_06475) - 1313170..1314513 (-) 1344 WP_044773013.1 GHKL domain-containing protein -
  OHM51_RS06480 (OHM51_06480) comE/blpR 1314524..1315264 (-) 741 WP_044773016.1 response regulator transcription factor Regulator
  OHM51_RS06485 (OHM51_06485) - 1315266..1315607 (-) 342 WP_044773018.1 LytTR family DNA-binding domain-containing protein -
  OHM51_RS06490 (OHM51_06490) - 1315806..1316201 (+) 396 WP_044773019.1 hypothetical protein -
  OHM51_RS06495 (OHM51_06495) - 1316137..1318017 (-) 1881 WP_044773020.1 SAG1250 family conjugative relaxase -
  OHM51_RS06500 (OHM51_06500) - 1318004..1318369 (-) 366 WP_044773022.1 plasmid mobilization protein -
  OHM51_RS06505 (OHM51_06505) - 1318372..1318734 (-) 363 WP_044773024.1 SAG1252 family conjugative relaxosome accessory protein -
  OHM51_RS06510 (OHM51_06510) - 1319076..1319318 (-) 243 WP_044773026.1 hypothetical protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 28739.14 Da        Isoelectric Point: 9.3165

>NTDB_id=751050 OHM51_RS06480 WP_044773016.1 1314524..1315264(-) (comE/blpR) [Streptococcus suis strain ID38828]
MNIFVLEDDFKQQARIEKIITKLLGKHNIVPKKFEISGKPHQLLQAIKEKGVHQLFFLDIEIKEEELKGLQVAKQIRDID
PYASIVFVTTHSEFMPLSFRYQVSALDYIDKGLGATEFESRIEAALFHVYGKNHKAVAEDSFYFKSKYAQIQYPFNEVYY
IETSPHPHRVILYTKTDRMEFTASLSDILKQDKRLLQCHRSFAINPRNVVKVDRQEKQVYFPNGSTCLVSRQKLESTLAV
IDRLHR

Nucleotide


Download         Length: 741 bp        

>NTDB_id=751050 OHM51_RS06480 WP_044773016.1 1314524..1315264(-) (comE/blpR) [Streptococcus suis strain ID38828]
ATGAATATCTTTGTATTGGAAGATGATTTTAAGCAACAAGCGAGAATTGAGAAGATTATTACTAAGCTGTTAGGAAAGCA
CAACATCGTTCCGAAAAAATTTGAAATTTCAGGAAAACCTCATCAGCTACTTCAAGCAATAAAAGAAAAAGGAGTACACC
AGCTATTCTTTTTGGATATTGAAATTAAGGAGGAGGAACTGAAAGGTCTGCAAGTCGCAAAACAAATTAGAGACATTGAT
CCTTATGCTAGCATTGTTTTTGTGACAACTCATTCCGAGTTTATGCCACTATCTTTTAGGTATCAGGTATCTGCCCTAGA
TTATATTGATAAAGGACTTGGAGCTACTGAATTTGAATCGCGAATAGAAGCTGCTTTATTTCATGTTTATGGTAAGAATC
ATAAAGCAGTGGCGGAGGATTCATTTTATTTCAAATCTAAATATGCCCAAATACAGTACCCCTTTAATGAAGTGTACTAC
ATCGAGACTTCTCCACATCCTCATCGTGTTATCCTTTACACAAAAACAGACCGAATGGAGTTTACAGCAAGTTTATCAGA
TATTCTGAAACAAGATAAGCGACTGTTACAATGTCATCGTTCATTTGCAATCAATCCGAGGAATGTTGTTAAGGTTGATC
GGCAAGAAAAGCAGGTCTATTTTCCAAATGGCTCTACCTGTCTTGTCTCAAGGCAAAAGCTAGAATCAACTTTAGCTGTT
ATTGATAGACTGCATAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-122)

LytTr DNA-binding domain (LytTR)

(151-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

54.545

98.374

0.537
  comE/comE1 Streptococcus equinus JB1

42.678

97.154

0.415
  comE/comE2 Streptococcus equinus JB1

36.885

99.187

0.366