Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | F6Y16_RS14290 | Genome accession | NZ_AP020318 |
| Coordinates | 2816300..2816770 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain KUH180038 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2790714..2821939 | 2816300..2816770 | within | 0 |
Gene organization within MGE regions
Location: 2790714..2821939
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6Y16_RS14110 (KUH180038_2619) | groES | 2790714..2790998 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| F6Y16_RS14115 (KUH180038_2620) | groL | 2791074..2792690 (+) | 1617 | WP_000240645.1 | chaperonin GroEL | - |
| F6Y16_RS14120 | - | 2792785..2793331 (-) | 547 | Protein_2676 | site-specific integrase | - |
| F6Y16_RS14125 | - | 2793392..2793604 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| F6Y16_RS14130 (KUH180038_2621) | - | 2793601..2794191 (+) | 591 | WP_001293058.1 | terminase small subunit | - |
| F6Y16_RS14135 (KUH180038_2622) | - | 2794509..2794946 (+) | 438 | WP_010956570.1 | hypothetical protein | - |
| F6Y16_RS14140 (KUH180038_2623) | - | 2795052..2795495 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| F6Y16_RS14150 (KUH180038_2624) | - | 2796348..2797655 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| F6Y16_RS14155 (KUH180038_2625) | - | 2797816..2798727 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| F6Y16_RS14160 (KUH180038_2627) | - | 2798789..2799633 (+) | 845 | Protein_2683 | class I SAM-dependent methyltransferase | - |
| F6Y16_RS14165 (KUH180038_2628) | - | 2800005..2801228 (-) | 1224 | WP_000206638.1 | ArgE/DapE family deacylase | - |
| F6Y16_RS14170 (KUH180038_2629) | lukH | 2801663..2802718 (+) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| F6Y16_RS14175 (KUH180038_2630) | lukG | 2802740..2803756 (+) | 1017 | WP_000595324.1 | bi-component leukocidin LukGH subunit G | - |
| F6Y16_RS14180 (KUH180038_2631) | sph | 2803994..2804818 (-) | 825 | Protein_2687 | sphingomyelin phosphodiesterase | - |
| F6Y16_RS14185 (KUH180038_2632) | - | 2804875..2805912 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| F6Y16_RS14190 (KUH180038_2633) | - | 2805971..2806435 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| F6Y16_RS14195 (KUH180038_2634) | - | 2806535..2806717 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| F6Y16_RS14200 (KUH180038_2635) | - | 2806921..2807262 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| F6Y16_RS14205 (KUH180038_2636) | - | 2807268..2808200 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| F6Y16_RS14210 (KUH180038_2637) | - | 2808216..2808929 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| F6Y16_RS14215 | - | 2808892..2809065 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| F6Y16_RS14220 (KUH180038_2638) | - | 2809062..2809325 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| F6Y16_RS14225 (KUH180038_2639) | - | 2809341..2809556 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| F6Y16_RS14230 (KUH180038_2640) | - | 2809545..2809874 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| F6Y16_RS14235 (KUH180038_2641) | - | 2809925..2810677 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| F6Y16_RS14240 (KUH180038_2642) | - | 2810693..2810890 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| F6Y16_RS14245 (KUH180038_2643) | - | 2810877..2811257 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| F6Y16_RS14250 (KUH180038_2644) | - | 2811312..2811635 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| F6Y16_RS14255 (KUH180038_2645) | - | 2811632..2811793 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| F6Y16_RS14260 (KUH180038_2646) | - | 2811888..2812190 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| F6Y16_RS14265 (KUH180038_2647) | - | 2812195..2812455 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| F6Y16_RS14270 (KUH180038_2648) | - | 2812464..2812727 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| F6Y16_RS14275 (KUH180038_2649) | - | 2812736..2814679 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| F6Y16_RS14280 (KUH180038_2650) | - | 2814681..2815601 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| F6Y16_RS14285 (KUH180038_2651) | - | 2815682..2816299 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| F6Y16_RS14290 (KUH180038_2652) | ssbA | 2816300..2816770 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| F6Y16_RS14295 (KUH180038_2653) | - | 2816800..2817693 (+) | 894 | WP_000148321.1 | DnaD domain protein | - |
| F6Y16_RS14300 (KUH180038_2654) | - | 2817700..2817918 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| F6Y16_RS14305 (KUH180038_2655) | - | 2817927..2818331 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| F6Y16_RS14310 (KUH180038_2656) | - | 2818344..2818712 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| F6Y16_RS14315 (KUH180038_2657) | - | 2818716..2818958 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| F6Y16_RS14320 (KUH180038_2658) | - | 2818973..2819221 (+) | 249 | WP_001065094.1 | DUF1024 family protein | - |
| F6Y16_RS14325 (KUH180038_2659) | - | 2819214..2819750 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| F6Y16_RS14330 (KUH180038_2660) | - | 2819787..2820032 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| F6Y16_RS14335 (KUH180038_2661) | - | 2820029..2820235 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| F6Y16_RS14340 (KUH180038_2662) | - | 2820232..2820618 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| F6Y16_RS14345 (KUH180038_2663) | rinB | 2820615..2820764 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| F6Y16_RS14350 (KUH180038_2664) | - | 2820764..2820964 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| F6Y16_RS14355 (KUH180038_2665) | - | 2820992..2821408 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| F6Y16_RS14360 (KUH180038_2666) | - | 2821640..2821939 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=74741 F6Y16_RS14290 WP_000934760.1 2816300..2816770(+) (ssbA) [Staphylococcus aureus strain KUH180038]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=74741 F6Y16_RS14290 WP_000934760.1 2816300..2816770(+) (ssbA) [Staphylococcus aureus strain KUH180038]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |