Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   SAGCMC97051_RS05640 Genome accession   NZ_AP020310
Coordinates   1057560..1058240 (-) Length   226 a.a.
NCBI ID   WP_000590620.1    Uniprot ID   A0AAV3JNX7
Organism   Streptococcus agalactiae strain GCMC97051     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052560..1063240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAGCMC97051_RS05620 (SAGCMC97051_10330) - 1053191..1053523 (-) 333 WP_000402075.1 putative DNA-binding protein -
  SAGCMC97051_RS05625 (SAGCMC97051_10340) - 1053665..1054798 (-) 1134 WP_000564846.1 ISAs1-like element IS1548 family transposase -
  SAGCMC97051_RS05630 (SAGCMC97051_10350) - 1054991..1056124 (-) 1134 WP_000564846.1 ISAs1-like element IS1548 family transposase -
  SAGCMC97051_RS05635 (SAGCMC97051_10360) ciaH 1056263..1057576 (-) 1314 WP_000042580.1 sensor histidine kinase Regulator
  SAGCMC97051_RS05640 (SAGCMC97051_10370) ciaR 1057560..1058240 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  SAGCMC97051_RS05645 (SAGCMC97051_10380) - 1058402..1060951 (-) 2550 WP_000859382.1 M1 family metallopeptidase -
  SAGCMC97051_RS05650 (SAGCMC97051_10390) phoU 1061097..1061750 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  SAGCMC97051_RS05655 (SAGCMC97051_10400) pstB 1061784..1062542 (-) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25852.63 Da        Isoelectric Point: 4.2507

>NTDB_id=74553 SAGCMC97051_RS05640 WP_000590620.1 1057560..1058240(-) (ciaR) [Streptococcus agalactiae strain GCMC97051]
MIKILLIEDDLSLSNSVFDFLDDFADVMQIFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGITTPVLIMTA
KESIDDKGQGFDLGADDYLTKPFYLEELKMRIQALLKRSGKFNDNSLIYGDIRVDMSTNSTFVNQTEVELLGKEFDLLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKVRKKLKGTLFSENLQTLRSVGYILKHVETD

Nucleotide


Download         Length: 681 bp        

>NTDB_id=74553 SAGCMC97051_RS05640 WP_000590620.1 1057560..1058240(-) (ciaR) [Streptococcus agalactiae strain GCMC97051]
ATGATAAAAATTTTATTAATTGAAGATGACTTGAGTCTTTCCAATTCCGTTTTTGATTTCCTTGATGACTTTGCCGATGT
CATGCAAATTTTTGATGGAGAAGAGGGTCTTTACGAAGCCGAAAGTGGAGTCTATGATCTGATTCTTCTAGATCTCATGT
TACCTGAAAAAAACGGCTTCCAAGTGTTGAAAGAGCTACGTGAAAAAGGTATTACAACCCCTGTATTAATAATGACCGCT
AAAGAAAGCATTGATGATAAGGGACAAGGTTTCGACTTAGGTGCTGATGATTATCTAACAAAACCTTTTTACCTAGAAGA
ACTAAAAATGCGAATTCAGGCTCTTTTAAAGCGTTCTGGAAAATTTAATGATAACAGCCTAATTTATGGTGATATTCGCG
TAGACATGTCTACTAACTCAACCTTTGTTAATCAAACAGAAGTTGAGCTCTTAGGTAAAGAGTTTGATCTTTTAGTCTAT
TTCCTTCAAAATCAAAATGTTATCTTACCGAAATCTCAAATCTTTGATCGTATTTGGGGATTTGATAGTGATACAACGAT
TTCAGTTGTAGAAGTCTATGTCTCTAAGGTTCGGAAAAAATTAAAAGGAACACTTTTTTCAGAAAACCTTCAAACTTTGC
GTAGTGTAGGATATATTTTAAAGCATGTCGAAACCGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae TIGR4

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae D39

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae R6

88.393

99.115

0.876
  ciaR Streptococcus pneumoniae Rx1

88.393

99.115

0.876
  ciaR Streptococcus mutans UA159

88.688

97.788

0.867
  vicR Streptococcus mutans UA159

35.193

100

0.363
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.607

99.115

0.363

Multiple sequence alignment