Detailed information NTG0744607

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QBD03_RS02055
• Genome accession: NZ_CP122959
• Coordinates: 457494..458501 (+)
• Length: 335 a.a.
• NCBI ID: WP_011374076.1
• Uniprot ID: Q38YQ9
• Organism: Latilactobacillus sakei strain HUP1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 452494..463501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBD03_RS02035 (QBD03_02035)	hexB	453380..455338 (+)	1959	WP_025016298.1	DNA mismatch repair endonuclease MutL	Machinery gene
QBD03_RS02040 (QBD03_02040)	-	455338..455883 (+)	546	WP_016264640.1	Maf family protein	-
QBD03_RS02045 (QBD03_02045)	-	455896..456459 (+)	564	WP_280103106.1	TIGR00730 family Rossman fold protein	-
QBD03_RS02050 (QBD03_02050)	ruvA	456870..457481 (+)	612	WP_056936468.1	Holliday junction branch migration protein RuvA	Machinery gene
QBD03_RS02055 (QBD03_02055)	ruvB	457494..458501 (+)	1008	WP_011374076.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QBD03_RS02060 (QBD03_02060)	queA	458516..459547 (+)	1032	WP_011374077.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
QBD03_RS02065 (QBD03_02065)	-	459574..460095 (+)	522	WP_280103107.1	GNAT family protein	-
QBD03_RS02070 (QBD03_02070)	arcA	460302..461537 (+)	1236	WP_016264645.1	arginine deiminase	-
QBD03_RS02075 (QBD03_02075)	argF	461563..462579 (+)	1017	WP_011374080.1	ornithine carbamoyltransferase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37265.71 Da
• Isoelectric Point: 4.8413

>NTDB_id=744607 QBD03_RS02055 WP_011374076.1 457494..458501(+) (ruvB) [Latilactobacillus sakei strain HUP1]
MADERIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPPGLGKTTLAMVIANELQ
VQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEIHRLPKMVEELLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGA
TTRAGLLSAPLRDRFGIVEHMAYYTEADLMDIVQRSAGVFNMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQN
TIDQAIADHALSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEVYEPYLLQIGFLKRTQRGRMV
TPAGYAHLGMPYPEK

Nucleotide

• Length: 1008 bp

>NTDB_id=744607 QBD03_RS02055 WP_011374076.1 457494..458501(+) (ruvB) [Latilactobacillus sakei strain HUP1]
ATGGCAGATGAGCGAATTGTTTCAGCCGAAAACGATGATTTTGCTGAAGCAAGCATTGAAAAAACATTGCGGCCACAAGT
CCTTGCACAATATATCGGTCAAGATCGGGTTAAAAATGAATTAGCGGTCTATATTGAAGCGGCCAAAAAACGGGAAGAGT
CCCTCGATCACGTTTTACTTTATGGCCCACCAGGTTTGGGGAAAACCACGTTAGCGATGGTGATTGCCAACGAGTTGCAA
GTCCAGATTCGAACGACGAGTGGTCCTGCAATTGAGCGGCCTGGGGATTTAGTGGCGTTATTAAACGAGTTACAACCTGG
GGATGTTTTATTTATTGATGAAATTCATCGCTTACCTAAGATGGTTGAAGAATTACTTTATTCAGCGATGGAAGATTTCT
ACATCGATATTGTGGTTGGTCAAGGGCCCACCGCACATCCCGTCCATTTTCCATTACCACCGTTCACATTGATTGGCGCG
ACGACGCGGGCGGGCTTATTGTCTGCGCCATTGCGAGATCGTTTCGGAATTGTGGAACATATGGCTTACTACACGGAAGC
TGATTTGATGGACATTGTGCAACGCTCAGCCGGCGTCTTTAACATGTCGATTGTGCCAGATGGCGCGTTAGAAATCGCAC
GTCGCTCGCGAGGGACGCCGCGAATTGCCAATCGGTTGTTGAAACGAACTCGAGATTACGCACAAGTGGCTGACCAAAAT
ACGATTGATCAGGCGATTGCTGATCACGCATTAAGTCAGCTACAAGTTGATATTCGGGGCTTAGACGGTGTCGATCGCAA
AATCCTCCAGATGATGATTGATTATTATCAAGGCGGACCAGTCGGTTTAAAAACCATTGCCGCCAATATTGGTGAAGAAA
ACGAAACAATTGAAGAAGTTTACGAGCCTTATTTACTGCAAATTGGCTTTTTAAAACGAACGCAAAGAGGCCGGATGGTA
ACGCCGGCTGGTTATGCCCATTTAGGCATGCCTTATCCAGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (260-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

3D structure

• AlphaFold DB: Q38YQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	64.653	98.806	0.639
ruvB	Streptococcus pneumoniae R6	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae D39	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae TIGR4	64.375	95.522	0.615
ruvB	Synechocystis sp. PCC 6803	58.28	93.731	0.546
ruvB	Helicobacter pylori 26695	51.829	97.91	0.507