Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QBD03_RS02050 Genome accession   NZ_CP122959
Coordinates   456870..457481 (+) Length   203 a.a.
NCBI ID   WP_056936468.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 451870..462481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS02035 (QBD03_02035) hexB 453380..455338 (+) 1959 WP_025016298.1 DNA mismatch repair endonuclease MutL Machinery gene
  QBD03_RS02040 (QBD03_02040) - 455338..455883 (+) 546 WP_016264640.1 Maf family protein -
  QBD03_RS02045 (QBD03_02045) - 455896..456459 (+) 564 WP_280103106.1 TIGR00730 family Rossman fold protein -
  QBD03_RS02050 (QBD03_02050) ruvA 456870..457481 (+) 612 WP_056936468.1 Holliday junction branch migration protein RuvA Machinery gene
  QBD03_RS02055 (QBD03_02055) ruvB 457494..458501 (+) 1008 WP_011374076.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QBD03_RS02060 (QBD03_02060) queA 458516..459547 (+) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QBD03_RS02065 (QBD03_02065) - 459574..460095 (+) 522 WP_280103107.1 GNAT family protein -
  QBD03_RS02070 (QBD03_02070) arcA 460302..461537 (+) 1236 WP_016264645.1 arginine deiminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22159.35 Da        Isoelectric Point: 4.8129

>NTDB_id=744606 QBD03_RS02050 WP_056936468.1 456870..457481(+) (ruvA) [Latilactobacillus sakei strain HUP1]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIYVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=744606 QBD03_RS02050 WP_056936468.1 456870..457481(+) (ruvA) [Latilactobacillus sakei strain HUP1]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTACAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTATGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGTTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAAAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTCGGGAAGAAGACGGCCCAACAGATTGCCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGATGCA
CTAGCGGCCTTGAGTGCGCTTGGTTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(157-201)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.78

100

0.493
  ruvA Streptococcus pneumoniae R6

48.78

100

0.493
  ruvA Streptococcus pneumoniae D39

48.78

100

0.493
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463