Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   QBD03_RS02035 Genome accession   NZ_CP122959
Coordinates   453380..455338 (+) Length   652 a.a.
NCBI ID   WP_025016298.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 448380..460338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS02025 (QBD03_02025) - 449925..450731 (+) 807 WP_076647782.1 TIGR00282 family metallophosphoesterase -
  QBD03_RS02030 (QBD03_02030) hexA 450753..453356 (+) 2604 WP_076647779.1 DNA mismatch repair protein MutS Machinery gene
  QBD03_RS02035 (QBD03_02035) hexB 453380..455338 (+) 1959 WP_025016298.1 DNA mismatch repair endonuclease MutL Machinery gene
  QBD03_RS02040 (QBD03_02040) - 455338..455883 (+) 546 WP_016264640.1 Maf family protein -
  QBD03_RS02045 (QBD03_02045) - 455896..456459 (+) 564 WP_280103106.1 TIGR00730 family Rossman fold protein -
  QBD03_RS02050 (QBD03_02050) ruvA 456870..457481 (+) 612 WP_056936468.1 Holliday junction branch migration protein RuvA Machinery gene
  QBD03_RS02055 (QBD03_02055) ruvB 457494..458501 (+) 1008 WP_011374076.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QBD03_RS02060 (QBD03_02060) queA 458516..459547 (+) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QBD03_RS02065 (QBD03_02065) - 459574..460095 (+) 522 WP_280103107.1 GNAT family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72749.18 Da        Isoelectric Point: 5.4280

>NTDB_id=744605 QBD03_RS02035 WP_025016298.1 453380..455338(+) (hexB) [Latilactobacillus sakei strain HUP1]
MGKIHELSEILSNQIAAGEVIERPASVVKELVENAIDANSTQVDIVVEQAGLQMIQVIDNGDGIEPEDVPVAFKRHATSK
IATRQDLFKIQSLGFRGEALASIASVSDLTIETATADSLGTFAHFKGGLLEEQKTNPIRPGTAITVRDLFFNTPARLKYV
KTFQTELANIVDIVNRLAMSHPQIAFTLTNDDHLLLKTAGNNDLKQTIAGIYGVTMAKKLLAVSASDLDFKLTGYVSLPE
LTRATRNYLSILINGRFIKNYQLNKAIIKGYGSKLMVGRYPIAVLAIEMDPLLIDVNVHPTKQEVRLSKETALMTLIEGA
IKERLATENLIPDAMQNLKRTKTVDVDQLQMNLNQITQERRHPSGTVRPVSPMPIPVKTVTPEIAETETPLAAPTAKAPS
MTPERPLFEQPQALAEWDQKYATEAVGKPFGDQVIDETDESEENVVEPTVRFPELRYIGQLHSTFLLAEGEDGFYILDQH
AAQERIKYEYYREKIGEVSTSVQNLLVPLVLEYPNSDALKIQEKTELLASVGIQLENFGQNSFVVHSHPTWIEQGQEEMT
IRGMIDDVLKDGRISIAQFREKTAIMMSCKQSIKAHHHLDDTQAKALLADLAKTENPFNCPHGRPVLIHYTQKDLEKMFK
RIQEPHHSWEGE

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=744605 QBD03_RS02035 WP_025016298.1 453380..455338(+) (hexB) [Latilactobacillus sakei strain HUP1]
ATGGGGAAAATTCATGAACTGTCGGAAATTCTGAGTAATCAAATTGCGGCGGGGGAAGTGATTGAACGCCCCGCCTCAGT
GGTCAAGGAATTGGTTGAAAACGCGATTGATGCTAATAGTACGCAAGTCGATATTGTTGTTGAACAGGCCGGTTTACAGA
TGATTCAAGTGATCGATAACGGTGACGGGATTGAACCAGAAGATGTGCCAGTCGCCTTTAAGCGGCATGCCACCAGTAAG
ATTGCGACTCGGCAAGATTTGTTCAAGATTCAATCGCTAGGGTTTCGGGGTGAAGCGTTAGCTAGTATCGCGTCCGTTTC
CGATTTAACGATTGAAACGGCAACTGCGGACTCTCTAGGAACCTTTGCTCATTTTAAGGGTGGTCTGTTAGAGGAACAAA
AAACAAATCCGATTCGACCGGGGACGGCGATTACGGTGCGGGATTTATTCTTTAATACACCGGCCCGATTGAAATACGTG
AAGACTTTTCAAACCGAATTGGCGAATATCGTCGATATCGTCAATCGGCTAGCAATGAGTCATCCACAGATTGCCTTTAC
GCTAACCAATGATGACCATCTACTTTTAAAAACGGCCGGCAACAATGATTTAAAACAAACGATTGCTGGTATTTATGGCG
TCACCATGGCCAAGAAACTCTTAGCCGTGAGTGCTTCGGATTTAGATTTTAAACTAACGGGCTACGTGTCATTGCCGGAA
TTAACGCGGGCAACGCGCAATTATTTGTCGATTTTAATTAATGGTCGGTTTATTAAAAATTACCAATTGAATAAGGCCAT
TATCAAGGGCTACGGTTCTAAATTGATGGTCGGACGCTATCCAATCGCCGTCTTAGCGATTGAGATGGATCCGCTATTGA
TCGATGTCAACGTGCATCCAACAAAACAGGAAGTCCGCTTAAGCAAAGAAACTGCCTTGATGACCTTGATTGAAGGGGCA
ATCAAAGAAAGACTGGCAACCGAGAATTTAATTCCAGATGCCATGCAGAATTTGAAACGGACCAAGACGGTAGATGTTGA
TCAGCTCCAGATGAATTTAAACCAAATTACACAAGAACGACGGCACCCAAGCGGTACGGTGCGACCAGTCAGTCCAATGC
CAATCCCAGTAAAAACGGTAACACCCGAAATTGCGGAAACCGAAACGCCGTTAGCCGCACCAACTGCTAAAGCGCCATCG
ATGACACCGGAGCGGCCCTTATTTGAGCAACCCCAGGCATTGGCCGAGTGGGATCAGAAGTACGCGACAGAAGCGGTTGG
AAAGCCGTTTGGTGATCAAGTGATAGACGAAACGGACGAAAGTGAAGAAAACGTAGTCGAACCCACTGTTCGGTTCCCAG
AGTTACGCTACATTGGGCAACTGCATAGTACTTTCTTATTAGCGGAAGGCGAAGATGGCTTTTATATCTTGGATCAACAC
GCTGCGCAAGAACGGATTAAGTACGAATATTACCGAGAAAAAATTGGGGAAGTCAGCACCTCTGTGCAAAACTTGTTAGT
ACCACTTGTTTTGGAATATCCGAATAGTGATGCGCTAAAGATTCAGGAAAAAACTGAACTTTTAGCCTCAGTCGGAATCC
AATTAGAAAATTTCGGGCAGAATAGTTTTGTGGTCCACAGTCACCCAACTTGGATTGAACAGGGACAAGAGGAAATGACG
ATTCGTGGGATGATTGACGATGTTTTAAAAGACGGTCGCATTAGCATTGCCCAATTCCGTGAGAAGACGGCGATTATGAT
GAGCTGTAAGCAATCGATTAAAGCGCACCATCATTTAGATGATACCCAGGCTAAAGCACTTTTAGCTGATCTAGCGAAGA
CCGAGAATCCGTTTAATTGTCCCCATGGGCGCCCGGTTTTGATTCACTATACGCAAAAAGATTTGGAAAAGATGTTTAAA
CGGATTCAAGAACCACATCATAGTTGGGAGGGCGAATAA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(455-599)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-325)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

50.381

100

0.508