Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexA   Type   Machinery gene
Locus tag   QBD03_RS02030 Genome accession   NZ_CP122959
Coordinates   450753..453356 (+) Length   867 a.a.
NCBI ID   WP_076647779.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 445753..458356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS02020 (QBD03_02020) - 447921..449750 (+) 1830 WP_280103105.1 APC family permease -
  QBD03_RS02025 (QBD03_02025) - 449925..450731 (+) 807 WP_076647782.1 TIGR00282 family metallophosphoesterase -
  QBD03_RS02030 (QBD03_02030) hexA 450753..453356 (+) 2604 WP_076647779.1 DNA mismatch repair protein MutS Machinery gene
  QBD03_RS02035 (QBD03_02035) hexB 453380..455338 (+) 1959 WP_025016298.1 DNA mismatch repair endonuclease MutL Machinery gene
  QBD03_RS02040 (QBD03_02040) - 455338..455883 (+) 546 WP_016264640.1 Maf family protein -
  QBD03_RS02045 (QBD03_02045) - 455896..456459 (+) 564 WP_280103106.1 TIGR00730 family Rossman fold protein -
  QBD03_RS02050 (QBD03_02050) ruvA 456870..457481 (+) 612 WP_056936468.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 867 a.a.        Molecular weight: 96864.65 Da        Isoelectric Point: 5.2556

>NTDB_id=744604 QBD03_RS02030 WP_076647779.1 450753..453356(+) (hexA) [Latilactobacillus sakei strain HUP1]
MPQKTKETPMMAQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKASQLLELTLTARNKNAADPIPMCGVPHHAAQNYIDIL
VDQGYKVAICEQMEDPKTAKGMVKREVVQLVTPGTVMDEKAGHAKQNNYLTAVVAQGDQFGFAYTDLSTGEMKVSQISSL
DVLLNEMLSLQTKEVVVNHDVPSEVVQAFVQQQILVSYQDEGADTAEVSFVSQNISQPLALAVIKQLVVYLATTQKRHLG
HLQRAQAYEPSQYLKLDHSAKMNLELTASLRTGHKSGTLLWLLDETKTAMGGRLLKQWLERPLLDLNQIKNRQNQVASFL
QHYFERTNLQEALTKVYDLERLAGRVAFGSVNGRDLIQLKTSLEQIPKIKDVLTGINETQAFDQALTRLDPVDDVRTLIE
TAINPDSPISVTDGGIIQDGYDEQLDQYRNAMSNGKQWLAQLEAQEREATGIHNLKIGFNRVFGYYIEVTRANLSSLPEG
RYERKQTLTNAERFITPELKEKEQLILEAEERSTALEYELFTQVREQVKLQIERLQTLAKGVAALDVLQSFAVVSESYHY
VQPTLRTDSREIDLVDGRHPVVEKVLGRQKYIPNAVQMGKETDMLLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAKSA
NLPVFDQIFTRIGAADDLISGQSTFMVEMMEANRAIMSATANSLILFDEIGRGTATYDGMALAQAIIEYIHDHVHAKTLF
STHYHELTALADTLTALRNVHVGAVEENGELVFLHKMLAGPADKSYGIHVAKLAGMPETLLQRADVILGQLEDKPKAPVQ
PETVVPAQPTAAAVEEQMALFEPEVAAPVDKKTDKVVAAIKNFDLMSATPLEALNQLYEWQKQLNKH

Nucleotide


Download         Length: 2604 bp        

>NTDB_id=744604 QBD03_RS02030 WP_076647779.1 450753..453356(+) (hexA) [Latilactobacillus sakei strain HUP1]
ATGCCGCAAAAAACAAAAGAAACGCCAATGATGGCCCAATATCAAAAGGTTAAGGATCAATATCCAGACGCCTTTTTATT
TTATAGATTGGGTGATTTTTACGAATTATTCAATGACGATGCTGTTAAAGCATCACAACTTTTAGAATTAACGCTGACAG
CGCGTAATAAGAATGCAGCAGACCCCATTCCGATGTGTGGTGTGCCCCATCATGCAGCGCAAAACTACATTGATATTTTA
GTGGATCAAGGTTACAAGGTCGCCATTTGTGAACAGATGGAAGATCCTAAAACGGCTAAGGGCATGGTGAAACGCGAAGT
TGTCCAATTAGTAACACCTGGGACTGTGATGGACGAAAAAGCCGGTCACGCTAAACAAAATAATTATTTAACGGCAGTCG
TTGCACAAGGCGATCAATTTGGCTTTGCCTATACGGATTTATCCACAGGTGAAATGAAGGTTAGCCAAATCAGTAGTTTA
GATGTGTTATTAAACGAAATGTTGAGTTTACAAACCAAAGAAGTGGTTGTGAATCATGATGTCCCAAGCGAAGTCGTCCA
AGCCTTTGTCCAACAACAAATCTTGGTTTCTTATCAAGATGAGGGGGCCGATACGGCAGAGGTCAGTTTTGTTTCTCAAA
ACATCTCACAACCACTAGCGTTAGCCGTCATTAAACAATTAGTTGTTTATTTAGCAACGACGCAAAAGCGGCACTTGGGT
CATTTACAACGCGCCCAAGCCTATGAACCTTCTCAATACTTGAAGTTGGATCATTCGGCTAAGATGAACCTCGAATTGAC
GGCTTCATTACGAACTGGTCATAAGAGTGGGACGTTATTGTGGTTATTGGATGAAACGAAGACTGCGATGGGTGGTCGTT
TATTAAAACAATGGTTGGAACGACCATTGTTGGATCTAAACCAGATTAAGAACCGGCAAAACCAAGTCGCTAGTTTCTTA
CAGCATTACTTTGAACGGACGAACCTTCAAGAAGCCCTAACTAAAGTTTATGATTTGGAACGTCTAGCGGGTCGCGTTGC
TTTTGGGAGCGTTAATGGTCGCGATTTGATTCAATTAAAAACATCCTTAGAACAGATTCCAAAGATTAAAGATGTTTTGA
CGGGCATTAACGAAACGCAGGCTTTTGATCAAGCGTTAACGCGTTTGGATCCAGTTGATGATGTGCGGACGTTAATTGAA
ACAGCGATTAACCCGGATTCACCGATTTCAGTGACTGATGGTGGGATTATTCAAGATGGTTACGACGAACAACTTGATCA
ATACCGCAATGCGATGTCTAACGGCAAGCAGTGGTTGGCGCAATTAGAGGCGCAAGAACGAGAAGCTACGGGCATTCATA
ATTTGAAAATCGGCTTTAACCGCGTCTTTGGGTATTATATCGAAGTCACGCGGGCTAACTTGAGTTCATTACCGGAAGGG
CGGTATGAACGCAAACAAACGTTAACCAACGCCGAACGATTCATCACACCGGAATTAAAAGAAAAAGAACAACTGATTTT
AGAGGCGGAAGAACGCTCAACCGCTCTAGAATACGAATTGTTTACCCAAGTTCGGGAACAAGTGAAGTTACAAATTGAAC
GGCTCCAAACATTGGCTAAAGGCGTAGCGGCCCTAGATGTCTTGCAAAGTTTTGCGGTCGTCAGCGAAAGCTACCACTAT
GTCCAACCAACATTAAGAACTGATAGTCGCGAAATTGATTTAGTCGATGGCCGTCATCCGGTGGTTGAAAAAGTATTGGG
ACGCCAAAAATATATCCCCAATGCTGTTCAAATGGGCAAAGAAACGGATATGTTATTGATTACCGGGCCTAATATGTCTG
GTAAAAGTACCTACATGCGGCAATTGGCCTTAACGGTCATCATGGCGCAAATGGGTTGTTTTGTACCTGCCAAGTCAGCG
AACTTGCCTGTATTTGACCAAATCTTTACCCGCATTGGTGCGGCAGATGATTTGATTTCAGGACAAAGTACGTTTATGGT
AGAAATGATGGAAGCCAACCGTGCGATTATGAGTGCGACCGCCAATAGTTTAATTCTCTTCGATGAAATTGGTCGGGGAA
CGGCCACTTATGATGGGATGGCCTTGGCACAAGCGATTATCGAATATATCCATGATCATGTCCACGCTAAGACGCTCTTT
TCAACGCATTATCATGAACTGACGGCTTTAGCCGATACGTTGACCGCCCTTCGTAACGTGCATGTTGGTGCAGTTGAGGA
AAACGGTGAGTTGGTCTTCTTACACAAGATGTTGGCCGGACCTGCGGATAAGTCTTACGGGATTCATGTCGCTAAACTAG
CGGGCATGCCAGAAACCTTATTACAACGGGCCGATGTTATTTTAGGTCAGTTAGAAGATAAACCAAAAGCACCGGTGCAA
CCAGAAACAGTCGTACCAGCACAACCGACTGCAGCGGCTGTCGAAGAACAGATGGCGCTTTTTGAACCAGAAGTGGCGGC
CCCGGTCGATAAGAAAACAGATAAAGTGGTAGCGGCAATTAAGAATTTTGATTTGATGAGCGCCACACCACTAGAAGCCC
TCAATCAATTATATGAGTGGCAAAAGCAATTAAATAAACATTAA

Domains

Predicted by InterProScan.

MutS domain I (MutS_I)

(8-119)

MutS domain II (MutS_II)

(128-243)

MutS family domain IV (MutS_IV)

(420-512)

MutS domain V (MutS_V)

(605-792)

MutS domain III (MutS_III)

(263-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

52.079

99.885

0.52
  mutS Pseudomonas stutzeri strain ATCC 17587

38.54

100

0.39