Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | K5706_RS10115 | Genome accession | NZ_AP019849 |
| Coordinates | 2243634..2243948 (-) | Length | 104 a.a. |
| NCBI ID | WP_128811308.1 | Uniprot ID | - |
| Organism | Vibrio alfacsensis strain 04Ya249 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2243634..2253514 | 2243634..2243948 | within | 0 |
Gene organization within MGE regions
Location: 2243634..2253514
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5706_RS10115 (VA249_18990) | comEA | 2243634..2243948 (-) | 315 | WP_128811308.1 | ComEA family DNA-binding protein | Machinery gene |
| K5706_RS10120 (VA249_19000) | ppiD | 2244137..2245996 (-) | 1860 | WP_221069060.1 | peptidylprolyl isomerase | - |
| K5706_RS10125 (VA249_19010) | - | 2246230..2246502 (-) | 273 | WP_128811310.1 | HU family DNA-binding protein | - |
| K5706_RS10130 (VA249_19020) | lon | 2246694..2249045 (-) | 2352 | WP_221069868.1 | endopeptidase La | - |
| K5706_RS10135 (VA249_19030) | clpX | 2249176..2250456 (-) | 1281 | WP_128811312.1 | ATP-dependent protease ATP-binding subunit ClpX | - |
| K5706_RS10140 (VA249_19040) | clpP | 2250528..2251154 (-) | 627 | WP_211919766.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
| K5706_RS10145 (VA249_19050) | tig | 2251260..2252564 (-) | 1305 | WP_128811313.1 | trigger factor | - |
| K5706_RS23850 | - | 2252837..2253049 (-) | 213 | WP_225923904.1 | hypothetical protein | - |
| K5706_RS10150 (VA249_19060) | - | 2253332..2253514 (+) | 183 | WP_221069803.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11195.71 Da Isoelectric Point: 5.8294
>NTDB_id=74404 K5706_RS10115 WP_128811308.1 2243634..2243948(-) (comEA) [Vibrio alfacsensis strain 04Ya249]
MKWILTISLMLLSSLAWATDSQTGSAETSSNKAAKYDGIEITVNVNTASAQEIASLLNGIGEKKAQDIVDYRKEHGPFKT
AADLTNVKGIGDATVKKNEDRILL
MKWILTISLMLLSSLAWATDSQTGSAETSSNKAAKYDGIEITVNVNTASAQEIASLLNGIGEKKAQDIVDYRKEHGPFKT
AADLTNVKGIGDATVKKNEDRILL
Nucleotide
Download Length: 315 bp
>NTDB_id=74404 K5706_RS10115 WP_128811308.1 2243634..2243948(-) (comEA) [Vibrio alfacsensis strain 04Ya249]
ATGAAATGGATTTTAACAATAAGCTTAATGTTGTTGAGCTCTTTAGCTTGGGCTACAGACAGCCAAACTGGCAGCGCAGA
GACATCAAGCAATAAAGCAGCAAAGTATGACGGAATTGAAATTACCGTAAACGTGAATACCGCTTCGGCACAAGAAATTG
CGAGTTTGCTTAACGGTATCGGTGAAAAGAAAGCACAAGATATCGTTGATTACCGCAAGGAGCATGGGCCATTTAAAACG
GCTGCAGATTTGACGAATGTAAAAGGTATTGGCGATGCTACCGTGAAGAAAAACGAGGATCGAATCCTACTTTAA
ATGAAATGGATTTTAACAATAAGCTTAATGTTGTTGAGCTCTTTAGCTTGGGCTACAGACAGCCAAACTGGCAGCGCAGA
GACATCAAGCAATAAAGCAGCAAAGTATGACGGAATTGAAATTACCGTAAACGTGAATACCGCTTCGGCACAAGAAATTG
CGAGTTTGCTTAACGGTATCGGTGAAAAGAAAGCACAAGATATCGTTGATTACCGCAAGGAGCATGGGCCATTTAAAACG
GCTGCAGATTTGACGAATGTAAAAGGTATTGGCGATGCTACCGTGAAGAAAAACGAGGATCGAATCCTACTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
69.231 |
100 |
0.692 |
| comEA | Vibrio campbellii strain DS40M4 |
68.269 |
100 |
0.683 |
| comEA | Vibrio cholerae C6706 |
57.447 |
90.385 |
0.519 |
| comEA | Vibrio cholerae strain A1552 |
57.447 |
90.385 |
0.519 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
38.318 |
100 |
0.394 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
46.429 |
80.769 |
0.375 |