Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QA712_RS01340 Genome accession   NZ_CP121539
Coordinates   137614..138264 (-) Length   216 a.a.
NCBI ID   WP_317366878.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 132614..143264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS01310 (QA712_01290) - 132770..134302 (+) 1533 WP_332529328.1 Nramp family divalent metal transporter -
  QA712_RS01315 (QA712_01295) - 134404..135372 (+) 969 WP_003130649.1 PhoH family protein -
  QA712_RS01320 (QA712_01300) - 135430..135915 (+) 486 WP_311802577.1 NUDIX hydrolase -
  QA712_RS01325 (QA712_01305) ybeY 136061..136549 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  QA712_RS01330 (QA712_01310) - 136533..136988 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  QA712_RS01335 (QA712_01315) - 137002..137580 (+) 579 WP_047206265.1 nucleotidyltransferase family protein -
  QA712_RS01340 comFC/cflB 137614..138264 (-) 651 WP_317366878.1 ComF family protein Machinery gene
  QA712_RS01345 (QA712_01325) comFA 138261..139583 (-) 1323 WP_372757356.1 DEAD/DEAH box helicase Machinery gene
  QA712_RS01350 (QA712_01330) - 139640..140269 (+) 630 WP_003130660.1 YigZ family protein -
  QA712_RS01355 (QA712_01335) - 140403..140900 (+) 498 WP_003130662.1 VanZ family protein -
  QA712_RS01360 (QA712_01340) - 140948..141967 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  QA712_RS01365 (QA712_01345) - 142082..142828 (+) 747 WP_372757358.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25522.69 Da        Isoelectric Point: 9.3752

>NTDB_id=737262 QA712_RS01340 WP_317366878.1 137614..138264(-) (comFC/cflB) [Lactococcus lactis strain MA5]
MIKCLLCSRNIAQNFLFSELFLLKNPQNLLCSKCQKNFEKIPEAHCPRCCKPNFHEICTDCQNWEKRGYKIRHQAIFHYN
QAMKDYFSQYKFMGDYRLYQIFEPYFKNISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSIKQSSLNRK
ERLESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=737262 QA712_RS01340 WP_317366878.1 137614..138264(-) (comFC/cflB) [Lactococcus lactis strain MA5]
ATGATAAAGTGTTTGCTTTGTTCAAGAAATATTGCTCAAAACTTTCTATTTAGTGAACTTTTCCTACTCAAAAATCCTCA
AAATCTTTTATGTTCTAAATGTCAAAAAAATTTTGAAAAAATTCCTGAAGCTCACTGTCCTCGCTGCTGTAAGCCAAACT
TCCATGAGATCTGTACTGATTGTCAAAATTGGGAAAAAAGAGGATACAAAATCAGACATCAGGCAATTTTTCACTACAAT
CAAGCAATGAAAGATTATTTTAGTCAGTACAAATTTATGGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAA
AAATATTTCCCCAAAATCCCCTTTGGTTCCGATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGA
CTGCTTTTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGATCAAACAATCTAGCCTTAATCGAAAA
GAACGATTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGATGACAT
TTATACAACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTC
TCTGCCGCTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(178-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

46.364

100

0.472
  comFC/cflB Streptococcus mitis SK321

45.909

100

0.468
  comFC/cflB Streptococcus pneumoniae Rx1

45

100

0.458
  comFC/cflB Streptococcus pneumoniae D39

45

100

0.458
  comFC/cflB Streptococcus pneumoniae R6

45

100

0.458
  comFC/cflB Streptococcus pneumoniae TIGR4

45

100

0.458
  comFC Lactococcus lactis subsp. cremoris KW2

67.91

62.037

0.421
  comFC Bacillus subtilis subsp. subtilis str. 168

36.404

100

0.384