Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   OE104_RS14375 Genome accession   NZ_CP106878
Coordinates   2971005..2971364 (+) Length   119 a.a.
NCBI ID   WP_275417467.1    Uniprot ID   -
Organism   Fervidibacillus albus strain MEBiC13591     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2966005..2976364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS14345 (OE104_14355) - 2966772..2967605 (+) 834 WP_275417461.1 flagellar hook-basal body protein -
  OE104_RS14350 (OE104_14360) - 2967772..2968590 (+) 819 WP_338030328.1 flagellar hook-basal body protein -
  OE104_RS14355 (OE104_14365) - 2968617..2969060 (+) 444 WP_275417463.1 DNA-directed RNA polymerase subunit beta -
  OE104_RS14360 (OE104_14370) fabZ 2969091..2969513 (+) 423 WP_275417464.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OE104_RS14365 (OE104_14375) - 2969885..2970289 (+) 405 WP_275417465.1 hypothetical protein -
  OE104_RS14370 (OE104_14380) - 2970332..2970754 (-) 423 WP_275417466.1 YwpF family protein -
  OE104_RS14375 (OE104_14385) ssbB 2971005..2971364 (+) 360 WP_275417467.1 single-stranded DNA-binding protein Machinery gene
  OE104_RS14380 (OE104_14390) - 2971407..2971562 (+) 156 WP_275417468.1 hypothetical protein -
  OE104_RS14385 (OE104_14395) - 2972135..2975167 (-) 3033 WP_275417469.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13375.41 Da        Isoelectric Point: 9.5801

>NTDB_id=736389 OE104_RS14375 WP_275417467.1 2971005..2971364(+) (ssbB) [Fervidibacillus albus strain MEBiC13591]
MINQVTLVGRLVRDPELKITQEGIAVANVTLAVNRNFKNSNGMIDTDFIQCTLWKKMAENTVQYCRKGSVIGIVGRIQTR
NYTNSEGRKIYVTEVIADSVRFLDGKPVEERELVAQGKT

Nucleotide


Download         Length: 360 bp        

>NTDB_id=736389 OE104_RS14375 WP_275417467.1 2971005..2971364(+) (ssbB) [Fervidibacillus albus strain MEBiC13591]
ATGATTAACCAAGTAACATTAGTTGGCCGACTCGTCCGTGATCCGGAATTAAAAATTACGCAGGAAGGAATTGCCGTAGC
AAATGTGACGTTAGCTGTCAATCGGAATTTTAAAAATAGCAATGGCATGATCGACACCGACTTCATCCAATGCACCCTTT
GGAAGAAGATGGCGGAAAACACCGTCCAATATTGCCGAAAGGGGAGTGTAATCGGAATCGTCGGGCGAATACAAACGCGA
AATTATACGAATAGTGAAGGACGGAAAATTTATGTGACGGAAGTAATAGCAGATTCCGTTCGCTTCCTCGATGGGAAACC
GGTGGAGGAAAGGGAACTTGTCGCACAAGGAAAAACGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.727

92.437

0.58
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.774

89.076

0.479
  ssb Latilactobacillus sakei subsp. sakei 23K

48.649

93.277

0.454
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

88.235

0.387
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.509

89.076

0.37
  ssbA Streptococcus mutans UA159

41.509

89.076

0.37