Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OCL42_RS09410 Genome accession   NZ_CP106807
Coordinates   1795530..1796027 (+) Length   165 a.a.
NCBI ID   WP_263057282.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10736     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1790530..1801027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCL42_RS09375 (OCL42_09375) - 1790848..1791216 (+) 369 Protein_1815 pilin -
  OCL42_RS09380 (OCL42_09380) - 1791256..1791624 (+) 369 Protein_1816 pilin -
  OCL42_RS09385 (OCL42_09385) - 1791606..1791956 (+) 351 Protein_1817 pilin -
  OCL42_RS09390 (OCL42_09390) - 1792396..1792776 (+) 381 Protein_1818 pilin -
  OCL42_RS09395 (OCL42_09395) lpxC 1793270..1794193 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  OCL42_RS09400 (OCL42_09400) - 1794321..1794716 (+) 396 Protein_1820 pilin -
  OCL42_RS09405 (OCL42_09405) - 1794834..1794908 (+) 75 Protein_1821 pilin -
  OCL42_RS09410 (OCL42_09410) pilE 1795530..1796027 (+) 498 WP_263057282.1 pilin Machinery gene
  OCL42_RS12120 - 1796681..1796890 (+) 210 WP_407028660.1 hypothetical protein -
  OCL42_RS09415 (OCL42_09415) - 1796814..1797380 (+) 567 WP_407028657.1 opacity family porin -
  OCL42_RS09420 (OCL42_09420) - 1797394..1797564 (+) 171 WP_263074894.1 hypothetical protein -
  OCL42_RS09425 (OCL42_09425) pilA 1797649..1798902 (-) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  OCL42_RS09430 (OCL42_09430) msrAB 1799048..1800616 (+) 1569 WP_003696503.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17809.31 Da        Isoelectric Point: 9.5871

>NTDB_id=735493 OCL42_RS09410 WP_263057282.1 1795530..1796027(+) (pilE) [Neisseria gonorrhoeae strain 10736]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPKNNASAGVASSSTIK
GKYVKEVKVENGVVTAQMASSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVKRAAGNAGAADGKDTDKIDTKHLPSTCRD
KHSDT

Nucleotide


Download         Length: 498 bp        

>NTDB_id=735493 OCL42_RS09410 WP_263057282.1 1795530..1796027(+) (pilE) [Neisseria gonorrhoeae strain 10736]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCGAAAAACAACGCTTCTGCCGGCGTGGCATCTTCTTCAACAATCAAA
GGCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
CCGCCGGCAACGCCGGCGCCGCCGACGGCAAAGACACCGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGAT
AAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-159)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

81.928

100

0.824
  pilE Neisseria gonorrhoeae MS11

81.818

100

0.818
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.043

100

0.388
  pilA/pilA1 Eikenella corrodens VA1

38.323

100

0.388
  comP Acinetobacter baylyi ADP1

37.423

98.788

0.37