Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   LLE28_RS02350 Genome accession   NZ_CP106771
Coordinates   452942..453892 (+) Length   316 a.a.
NCBI ID   WP_003699627.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10531     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447942..458892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE28_RS02325 - 448591..449100 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LLE28_RS02330 - 449332..449913 (-) 582 WP_003690895.1 superoxide dismutase -
  LLE28_RS02335 dnaB 450077..451483 (+) 1407 WP_003699622.1 replicative DNA helicase -
  LLE28_RS02340 pilH 451637..452302 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LLE28_RS02345 pilV 452334..452945 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  LLE28_RS02350 pilJ 452942..453892 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  LLE28_RS02355 pilK 453871..454482 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LLE28_RS02360 pilL 454484..454957 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  LLE28_RS02365 - 455027..455335 (-) 309 WP_025456177.1 AzlD family protein -
  LLE28_RS02370 - 455332..456042 (-) 711 Protein_465 AzlC family ABC transporter permease -
  LLE28_RS02375 dut 456208..456660 (+) 453 WP_003699637.1 dUTP diphosphatase -
  LLE28_RS02380 dapC 456736..457923 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  LLE28_RS02385 yaaA 458079..458858 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34788.50 Da        Isoelectric Point: 9.1777

>NTDB_id=734775 LLE28_RS02350 WP_003699627.1 452942..453892(+) (pilJ) [Neisseria gonorrhoeae strain 10531]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 951 bp        

>NTDB_id=734775 LLE28_RS02350 WP_003699627.1 452942..453892(+) (pilJ) [Neisseria gonorrhoeae strain 10531]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

93.038

100

0.93