NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	N7921_RS17225	Genome accession	NZ_CP106652
Coordinates	3296179..3296865 (-)	Length	228 a.a.
NCBI ID	WP_263639812.1	Uniprot ID	-
Organism	Bacillus safensis strain 33.4
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3291179..3301865

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7921_RS17190 (N7921_17190)	fliW	3291317..3291751 (-)	435	WP_075611996.1	flagellar assembly protein FliW	-
N7921_RS17195 (N7921_17195)	-	3291780..3292358 (-)	579	WP_095409672.1	DUF6470 family protein	-
N7921_RS17200 (N7921_17200)	flgL	3292405..3293313 (-)	909	WP_263639811.1	flagellar hook-associated protein FlgL	-
N7921_RS17205 (N7921_17205)	flgK	3293323..3294843 (-)	1521	WP_144483665.1	flagellar hook-associated protein FlgK	-
N7921_RS17210 (N7921_17210)	-	3294859..3295341 (-)	483	WP_144472023.1	flagellar protein FlgN	-
N7921_RS17215 (N7921_17215)	flgM	3295360..3295623 (-)	264	WP_095409676.1	flagellar biosynthesis anti-sigma factor FlgM	-
N7921_RS17220 (N7921_17220)	-	3295703..3296122 (-)	420	WP_039181808.1	TIGR03826 family flagellar region protein	-
N7921_RS17225 (N7921_17225)	comFC	3296179..3296865 (-)	687	WP_263639812.1	ComF family protein	Machinery gene
N7921_RS17230 (N7921_17230)	-	3296862..3297155 (-)	294	WP_041088040.1	late competence development ComFB family protein	-
N7921_RS17235 (N7921_17235)	comFA	3297205..3298602 (-)	1398	WP_276553807.1	DEAD/DEAH box helicase	Machinery gene
N7921_RS17240 (N7921_17240)	-	3298722..3299564 (-)	843	WP_263639814.1	DegV family protein	-
N7921_RS17245 (N7921_17245)	degU	3299780..3300469 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
N7921_RS17250 (N7921_17250)	degS	3300534..3301709 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 26087.65 Da Isoelectric Point: 9.9366

                                >NTDB_id=733740 N7921_RS17225 WP_263639812.1 3296179..3296865(-) (comFC) [Bacillus safensis strain 33.4]

MICPICDGHFVPAFTWKSLLLLNDERLCVACKNQLVKIERPICPTCGRAQSNDQMCQDCDRWNERIDSTKVLIKNRSVYI

YNELMKDVLARFKFRGDTALVELFKRDVQAAFKRSFCIKDPLLIPIPLSNERLKERGFNQSVIIASLIGKPILQPLVKIH

QSKQSKKKKNERLDQKGLFQIKQTNVIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide

Download Length: 687 bp

                                >NTDB_id=733740 N7921_RS17225 WP_263639812.1 3296179..3296865(-) (comFC) [Bacillus safensis strain 33.4]

TTGATTTGCCCGATTTGCGATGGACATTTTGTGCCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGAGCGTCT

TTGTGTAGCATGTAAGAATCAATTAGTAAAGATTGAGCGTCCTATTTGTCCAACCTGCGGAAGAGCGCAGTCAAATGATC

AAATGTGCCAAGACTGTGATAGATGGAATGAACGCATTGATTCTACTAAAGTCCTTATAAAAAATAGGTCAGTTTATATC

TACAACGAGTTGATGAAAGATGTCCTTGCCCGCTTTAAATTTCGGGGTGATACGGCTTTAGTTGAGCTGTTTAAACGAGA

TGTACAAGCAGCATTTAAACGTTCCTTCTGCATAAAAGACCCATTGCTGATCCCGATCCCTTTAAGTAATGAAAGACTAA

AAGAAAGAGGGTTTAATCAGTCCGTTATCATTGCTTCCTTGATAGGTAAGCCGATATTGCAGCCACTCGTGAAAATACAT

CAAAGTAAGCAGTCCAAAAAAAAGAAAAATGAACGCCTAGATCAAAAAGGTTTGTTTCAAATAAAGCAAACAAATGTGAT

TGTTCAAAGAGATATTATATTAGTTGATGATATCTATACAACGGGAGCAACCATTTATGATGCGGCAAGAATTTTGAAAG

ACGCAGGTGCCAAAAGTGTTTCTTCTTTTACGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(142-226)

Double zinc ribbon domain (DZR_2)

(3-59)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	48.696	100	0.491
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.364
comFC/cflB	Streptococcus mitis SK321	36.245	100	0.364

Detailed information NTG0733740