Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   N7921_RS17235 Genome accession   NZ_CP106652
Coordinates   3297205..3298602 (-) Length   465 a.a.
NCBI ID   WP_276553807.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3292205..3303602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS17200 (N7921_17200) flgL 3292405..3293313 (-) 909 WP_263639811.1 flagellar hook-associated protein FlgL -
  N7921_RS17205 (N7921_17205) flgK 3293323..3294843 (-) 1521 WP_144483665.1 flagellar hook-associated protein FlgK -
  N7921_RS17210 (N7921_17210) - 3294859..3295341 (-) 483 WP_144472023.1 flagellar protein FlgN -
  N7921_RS17215 (N7921_17215) flgM 3295360..3295623 (-) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  N7921_RS17220 (N7921_17220) - 3295703..3296122 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  N7921_RS17225 (N7921_17225) comFC 3296179..3296865 (-) 687 WP_263639812.1 ComF family protein Machinery gene
  N7921_RS17230 (N7921_17230) - 3296862..3297155 (-) 294 WP_041088040.1 late competence development ComFB family protein -
  N7921_RS17235 (N7921_17235) comFA 3297205..3298602 (-) 1398 WP_276553807.1 DEAD/DEAH box helicase Machinery gene
  N7921_RS17240 (N7921_17240) - 3298722..3299564 (-) 843 WP_263639814.1 DegV family protein -
  N7921_RS17245 (N7921_17245) degU 3299780..3300469 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  N7921_RS17250 (N7921_17250) degS 3300534..3301709 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  N7921_RS17255 (N7921_17255) - 3301929..3302597 (+) 669 WP_263639815.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53283.13 Da        Isoelectric Point: 9.9882

>NTDB_id=733741 N7921_RS17235 WP_276553807.1 3297205..3298602(-) (comFA) [Bacillus safensis strain 33.4]
MNMDKAMELKRHLYSRHLLTVETRCAQSNLDWLEEKGLVNRTPAIERKADGFTCYRCGVSHKRYFAHSSCEECQKDCVYC
RSCIMMGKATECGFLYEWTGPKMVETYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQEIRIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHQQPLPVPTFQWIGHWKKKLKKKQLPSKVMNWMQ
RHIANKRRVLLFVPSIAVMKKATKILREHSLNVEGVSADDPVRKQKVQHFRDYAYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKNHIVKMNDTAAKEFTEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=733741 N7921_RS17235 WP_276553807.1 3297205..3298602(-) (comFA) [Bacillus safensis strain 33.4]
TTGAACATGGACAAAGCAATGGAACTAAAGCGGCATCTGTATTCACGCCATCTGCTCACTGTTGAAACAAGGTGCGCACA
GTCCAATTTAGATTGGCTGGAGGAGAAAGGCTTAGTTAATCGAACACCTGCCATTGAGAGGAAAGCAGATGGTTTTACAT
GCTACCGGTGTGGTGTATCACACAAGCGGTACTTTGCTCACTCTTCATGTGAAGAGTGTCAAAAGGATTGTGTGTACTGT
AGGTCATGCATCATGATGGGAAAAGCAACTGAATGTGGATTTCTTTATGAATGGACGGGTCCAAAAATGGTAGAAACATA
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCATCAGAAAGAATGATCGAAGCTATTAAAA
ACAAATTTGATCTACTCGTCTGGGCGGTTTGTGGAGCAGGAAAAACGGAAGTGCTTTTTCATGGAATTGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGAGATAAGAATAGCCGTACTTTATGGAGGCAGTTCACAAAGGTTTCAAATAGCACCGCTTGTGATCGCCACAACCC
ACCAGCTGATGAGATACAAAAATGCATTTGATGTGCTTATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATATATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCATCAGCAACCATTACCCGTCC
CGACCTTTCAATGGATCGGACATTGGAAAAAGAAATTAAAAAAGAAGCAGCTTCCTTCTAAAGTGATGAATTGGATGCAG
AGACATATTGCCAATAAGAGAAGAGTATTACTTTTTGTTCCTTCTATTGCTGTCATGAAGAAGGCAACGAAGATTCTTCG
AGAACACTCCTTAAACGTAGAGGGAGTATCTGCCGATGATCCAGTTAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
CATACGATGTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACCATACCAAATGTTCAAGTAGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTGGGCAGACATCCCGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAATCATATCGTAAAAATGAATGATACGGCTG
CAAAAGAGTTTACTGAAAAACAGTGTGGCTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.974

98.065

0.51