Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   N7921_RS17245 Genome accession   NZ_CP106652
Coordinates   3299780..3300469 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain 33.4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3294780..3305469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS17210 (N7921_17210) - 3294859..3295341 (-) 483 WP_144472023.1 flagellar protein FlgN -
  N7921_RS17215 (N7921_17215) flgM 3295360..3295623 (-) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  N7921_RS17220 (N7921_17220) - 3295703..3296122 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  N7921_RS17225 (N7921_17225) comFC 3296179..3296865 (-) 687 WP_263639812.1 ComF family protein Machinery gene
  N7921_RS17230 (N7921_17230) - 3296862..3297155 (-) 294 WP_041088040.1 late competence development ComFB family protein -
  N7921_RS17235 (N7921_17235) comFA 3297205..3298602 (-) 1398 WP_276553807.1 DEAD/DEAH box helicase Machinery gene
  N7921_RS17240 (N7921_17240) - 3298722..3299564 (-) 843 WP_263639814.1 DegV family protein -
  N7921_RS17245 (N7921_17245) degU 3299780..3300469 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  N7921_RS17250 (N7921_17250) degS 3300534..3301709 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  N7921_RS17255 (N7921_17255) - 3301929..3302597 (+) 669 WP_263639815.1 YigZ family protein -
  N7921_RS17260 (N7921_17260) - 3302582..3303673 (+) 1092 WP_095409678.1 LCP family protein -
  N7921_RS17265 (N7921_17265) - 3303709..3304776 (-) 1068 WP_048237563.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=733742 N7921_RS17245 WP_008348273.1 3299780..3300469(-) (degU) [Bacillus safensis strain 33.4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=733742 N7921_RS17245 WP_008348273.1 3299780..3300469(-) (degU) [Bacillus safensis strain 33.4]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTAAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGGCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996